On May 16, 2011, at 2:39 PM, Alexander Hansen wrote:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> On 5/12/11 8:37 PM, Marco Romoli wrote:
>>
>> On May 13, 2011, at 2:21 AM, Alexander Hansen wrote:
>>
>>> -----BEGIN PGP SIGNED MESSAGE-----
>>> Hash: SHA1
>>>
>>> On 5/12/11 7:54 PM, Marco Romoli wrote:
>>>>
>>>> Dear fink-beginners list
>>>>
>>>> I am trying to install gdl on my mac book but I get the following
>>>> error:
>>>>
>>>
>>>
>>>
>>>> Error! HDF4 needs to be configured with the --disable-netcdf option
>>>> in order to be used with the original netCDF library
>>>> (-alt suffixed HDF4 packages in case of Debian)
>>>> Check the INSTALL file of the HDF4 package for details
>>>>
>>>> (suitable Debian/Ubuntu package: libhdf4-alt-dev)
>>>> ^^^
>>>> ### execution of ./configure failed, exit code 255
>>>> Removing runtime build-lock...
>>>> Removing build-lock package...
>>>> /sw/bin/dpkg-lockwait -r fink-buildlock-gdl-0.9.1-1
>>>> (Reading database ... 48320 files and directories currently
>>>> installed.)
>>>> Removing fink-buildlock-gdl-0.9.1-1 ...
>>>> Failed: phase compiling: gdl-0.9.1-1 failed
>>>>
>>>>
>>>> Can yo help me?
>>>>
>>>> Thank you
>>>>
>>>> Marco Romoli
>>>>
>>>>
>>>> +++++++++++++++++++++++++++++++++++++++++
>>>>
>>>> Marco Romoli
>>>> rom...@arcetri.astro.it
>>>> mrom...@unifi.it
>>>>
>>>> Dip. di Fisica e Astronomia
>>>> Sezione di Astronomia e Scienza dello Spazio
>>>> Universita' di Firenze
>>>> Largo E. Fermi 2
>>>> 50125 Firenze, Italy
>>>>
>>>> Tel: +39-0552055233
>>>> Fax: +39-0552055252
>>>>
>>>> +++++++++++++++++++++++++++++++++++++++++
>>>>
>>>>
>>>
>>> 32- or 64-bit Fink?
>>
>> 32-bit
>>>
>>> Can you post the compiler command line from just before what you
>>> have
>>> posted already?
>>>
>> Yes:
>>
>>
>> ........
>> checking for plGetDrvDir in -lplplotd... yes
>>
>> Warning! Dynamic drivers have to be disabled in plplot
>> to make plplot work with ImageMagic:
>> - use the -DENABLE_DYNDRIVERS=OFF cmake option when
>> compiling plplot to disable dynamic drivers in plplot, or
>> - use --with-Magick=no here to not use ImageMagick in GDL.
>>
>> checking for Magick++-config... /sw/bin/Magick++-config
>> checking for GetMagickVersion in -lMagick++... yes
>> checking for nc-config... no
>> checking for nc_open in -lnetcdf... yes
>> checking netcdfcpp.h usability... yes
>> checking netcdfcpp.h presence... yes
>> checking for netcdfcpp.h... yes
>> checking for Hopen in -ldfalt... no
>> checking if linking with SZIP helps...
>> checking for Hclose in -ldfalt... no
>> checking for Hopen in -ldf... yes
>> checking for SDstart in -lmfhdf... yes
>> checking for sd_nccreate in -lmfhdf... no
>>
>> Error! HDF4 needs to be configured with the --disable-netcdf option
>> in order to be used with the original netCDF library
>> (-alt suffixed HDF4 packages in case of Debian)
>> Check the INSTALL file of the HDF4 package for details
>>
>> (suitable Debian/Ubuntu package: libhdf4-alt-dev)
>>
>>
>> Thank you
>> Marco
>>
>>
>> +++++++++++++++++++++++++++++++++++++++++
>>
>> Marco Romoli
>> rom...@arcetri.astro.it
>> mrom...@unifi.it
>>
>> Dip. di Fisica e Astronomia
>> Sezione di Astronomia e Scienza dello Spazio
>> Universita' di Firenze
>> Largo E. Fermi 2
>> 50125 Firenze, Italy
>>
>> Tel: +39-0552055233
>> Fax: +39-0552055252
>>
>> +++++++++++++++++++++++++++++++++++++++++
>>
>>
>
> Our HDF package _does_ use the --disable-netcdf flag. I also couldn't
> reproduce your result.
>
> Is it possible that you have another HDF installation, perhaps in
> /usr/local, which is interfering?
I did look for this HDF installation but I could not find it.
I also tried to disinstall HDF but with no positive result for the
installation of gdl.
After I post the full sequence of the gdl installation.
Thank you
Marco
fink install gdl
Information about 5011 packages read in 0 seconds.
The following package will be installed or updated:
gdl
The following 2 additional packages will be installed:
hdf hdf5
Do you want to continue? [Y/n] y
Reading buildlock packages...
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-i386/
sci/hdf_4.2r1-1012_darwin-i386.deb
Selecting previously deselected package hdf.
(Reading database ... 48048 files and directories currently installed.)
Unpacking hdf (from .../hdf_4.2r1-1012_darwin-i386.deb) ...
Setting up hdf (4.2r1-1012) ...
Reading buildlock packages...
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-i386/
sci/hdf5_1.6.8-4_darwin-i386.deb
Selecting previously deselected package hdf5.
(Reading database ... 48165 files and directories currently installed.)
Unpacking hdf5 (from .../hdf5_1.6.8-4_darwin-i386.deb) ...
Setting up hdf5 (1.6.8-4) ...
Clearing dependency_libs of .la files being installed
Setting runtime build-lock...
dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-gdl-0.9.1-1 /sw/src/
fink.build
dpkg-deb: building package `fink-buildlock-gdl-0.9.1-1' in `/sw/src/
fink.build/fink-buildlock-gdl-0.9.1-1_2011.05.18-01.03.50_darwin-
i386.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i /sw/src/fink.build/fink-buildlock-
gdl-0.9.1-1_2011.05.18-01.03.50_darwin-i386.deb
Selecting previously deselected package fink-buildlock-gdl-0.9.1-1.
(Reading database ... 48319 files and directories currently installed.)
Unpacking fink-buildlock-gdl-0.9.1-1 (from .../fink-buildlock-
gdl-0.9.1-1_2011.05.18-01.03.50_darwin-i386.deb) ...
Setting up fink-buildlock-gdl-0.9.1-1 (2011.05.18-01.03.50) ...
gzip -dc /sw/src/gdl-0.9.1.tar.gz | /sw/bin/tar -xf - --no-same-owner
--no-same-permissions
sed -e "s|lib_LIBRARIES|noinst_LIBRARIES|" -i src/antlr/Makefile.am
sed -e "s|GDLLexer lexer(istr, \"\")|GDLLexer lexer(istr, \"\",
GDLParser::NONE)|" -i src/widget.cpp
libtoolize -f
libtoolize: putting auxiliary files in `.'.
libtoolize: linking file `./ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: linking file `m4/libtool.m4'
libtoolize: linking file `m4/ltoptions.m4'
libtoolize: linking file `m4/ltsugar.m4'
libtoolize: linking file `m4/ltversion.m4'
libtoolize: linking file `m4/lt~obsolete.m4'
libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
libtoolize: `AC_PROG_RANLIB' is rendered obsolete by `LT_INIT'
autoreconf
./configure --prefix=/sw --with-plplotdir=/sw --with-ncursesdir=/sw --
with-readlinedir=/sw --with-gsldir=/sw --with-netcdf=/sw --with-hdf=/
sw --with-hdf5=/sw --with-Magick=/sw --with-fftw=/sw --without-python
--without-openmp -without-wxWidgets --disable-dependency-tracking
checking autoconf version... >=2.62
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for ranlib... ranlib
checking build system type... i386-apple-darwin9.8.0
checking host system type... i386-apple-darwin9.8.0
checking how to print strings... printf
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking for a sed that does not truncate output... /sw/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/libexec/gcc/i686-apple-
darwin9/4.0.1/ld
checking if the linker (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld)
is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -p
checking the name lister (/usr/bin/nm -p) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert i386-apple-darwin9.8.0 file names to i386-
apple-darwin9.8.0 format... func_convert_file_noop
checking how to convert i386-apple-darwin9.8.0 file names to toolchain
format... func_convert_file_noop
checking for /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld option to
reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... (cached) ranlib
checking command to parse /usr/bin/nm -p output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fno-common -DPIC
checking if gcc PIC flag -fno-common -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/libexec/gcc/i686-apple-
darwin9/4.0.1/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin9.8.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/libexec/gcc/i686-apple-
darwin9/4.0.1/ld
checking if the linker (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld)
is GNU ld... no
checking whether the g++ linker (/usr/libexec/gcc/i686-apple-
darwin9/4.0.1/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fno-common -DPIC
checking if g++ PIC flag -fno-common -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/libexec/gcc/i686-apple-
darwin9/4.0.1/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin9.8.0 dyld
checking how to hardcode library paths into programs... immediate
checking for 64-bit OS... no
checking for library containing dlopen... none required
checking for malloc_zone_statistics... yes
checking for sbrk... yes
checking for mallinfo... no
checking malloc.h usability... no
checking malloc.h presence... no
checking for malloc.h... no
checking malloc/malloc.h usability... yes
checking malloc/malloc.h presence... yes
checking for malloc/malloc.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking for nexttoward... yes
checking for initscr in -lncurses... yes
checking for stifle_history in -lreadline... yes
checking for rl_get_screen_size in -lreadline... yes
checking for gzopen in -lz... yes
checking for gsl_ran_binomial_knuth in -lgsl... yes
checking for cblas_drot in -lgslcblas... yes
checking for plsexit in -lplplotcxxd... yes
checking for plGetDrvDir in -lplplotd... yes
Warning! Dynamic drivers have to be disabled in plplot
to make plplot work with ImageMagic:
- use the -DENABLE_DYNDRIVERS=OFF cmake option when
compiling plplot to disable dynamic drivers in plplot, or
- use --with-Magick=no here to not use ImageMagick in GDL.
checking for Magick++-config... /sw/bin/Magick++-config
checking for GetMagickVersion in -lMagick++... yes
checking for nc-config... no
checking for nc_open in -lnetcdf... yes
checking netcdfcpp.h usability... yes
checking netcdfcpp.h presence... yes
checking for netcdfcpp.h... yes
checking for Hopen in -ldfalt... no
checking if linking with SZIP helps...
checking for Hclose in -ldfalt... no
checking for Hopen in -ldf... yes
checking for SDstart in -lmfhdf... yes
checking for sd_nccreate in -lmfhdf... no
Error! HDF4 needs to be configured with the --disable-netcdf option
in order to be used with the original netCDF library
(-alt suffixed HDF4 packages in case of Debian)
Check the INSTALL file of the HDF4 package for details
(suitable Debian/Ubuntu package: libhdf4-alt-dev)
^^^
### execution of ./configure failed, exit code 255
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-gdl-0.9.1-1
(Reading database ... 48320 files and directories currently installed.)
Removing fink-buildlock-gdl-0.9.1-1 ...
Failed: phase compiling: gdl-0.9.1-1 failed
Before reporting any errors, please run "fink selfupdate" and
try again. If you continue to have issues, please check to see if the
FAQ on fink's website solves the problem. If not, ask on the fink-users
or fink-beginners mailing lists, with a carbon copy to the maintainer:
Sebastien Maret <bma...@users.sourceforge.net>
Note that this is preferable to emailing the maintainer directly, since
most fink package maintainers do not have access to all possible
hardware and software configurations.
+++++++++++++++++++++++++++++++++++++++++
Marco Romoli
rom...@arcetri.astro.it
mrom...@unifi.it
Dip. di Fisica e Astronomia
Sezione di Astronomia e Scienza dello Spazio
Universita' di Firenze
Largo E. Fermi 2
50125 Firenze, Italy
Tel: +39-0552055233
Fax: +39-0552055252
+++++++++++++++++++++++++++++++++++++++++
------------------------------------------------------------------------------
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