-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 5/17/11 7:06 PM, Marco Romoli wrote: >
<snip> >>> >>> >> >> Our HDF package _does_ use the --disable-netcdf flag. I also couldn't >> reproduce your result. >> >> Is it possible that you have another HDF installation, perhaps in >> /usr/local, which is interfering? > > > I did look for this HDF installation but I could not find it. > I also tried to disinstall HDF but with no positive result for the > installation of gdl. > > After I post the full sequence of the gdl installation. > > Thank you > > Marco > > > > fink install gdl > Information about 5011 packages read in 0 seconds. > The following package will be installed or updated: > gdl > The following 2 additional packages will be installed: > hdf hdf5 > Do you want to continue? [Y/n] y > Reading buildlock packages... > /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-i386/ > sci/hdf_4.2r1-1012_darwin-i386.deb > Selecting previously deselected package hdf. > (Reading database ... 48048 files and directories currently installed.) > Unpacking hdf (from .../hdf_4.2r1-1012_darwin-i386.deb) ... > Setting up hdf (4.2r1-1012) ... > > Reading buildlock packages... > /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-i386/ > sci/hdf5_1.6.8-4_darwin-i386.deb > Selecting previously deselected package hdf5. > (Reading database ... 48165 files and directories currently installed.) > Unpacking hdf5 (from .../hdf5_1.6.8-4_darwin-i386.deb) ... > Setting up hdf5 (1.6.8-4) ... > Clearing dependency_libs of .la files being installed > > Setting runtime build-lock... > dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-gdl-0.9.1-1 /sw/src/ > fink.build > dpkg-deb: building package `fink-buildlock-gdl-0.9.1-1' in `/sw/src/ > fink.build/fink-buildlock-gdl-0.9.1-1_2011.05.18-01.03.50_darwin- > i386.deb'. > Installing build-lock package... > /sw/bin/dpkg-lockwait -i /sw/src/fink.build/fink-buildlock- > gdl-0.9.1-1_2011.05.18-01.03.50_darwin-i386.deb > Selecting previously deselected package fink-buildlock-gdl-0.9.1-1. > (Reading database ... 48319 files and directories currently installed.) > Unpacking fink-buildlock-gdl-0.9.1-1 (from .../fink-buildlock- > gdl-0.9.1-1_2011.05.18-01.03.50_darwin-i386.deb) ... > Setting up fink-buildlock-gdl-0.9.1-1 (2011.05.18-01.03.50) ... > > gzip -dc /sw/src/gdl-0.9.1.tar.gz | /sw/bin/tar -xf - --no-same-owner > --no-same-permissions > sed -e "s|lib_LIBRARIES|noinst_LIBRARIES|" -i src/antlr/Makefile.am > sed -e "s|GDLLexer lexer(istr, \"\")|GDLLexer lexer(istr, \"\", > GDLParser::NONE)|" -i src/widget.cpp > libtoolize -f > libtoolize: putting auxiliary files in `.'. > libtoolize: linking file `./ltmain.sh' > libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. > libtoolize: linking file `m4/libtool.m4' > libtoolize: linking file `m4/ltoptions.m4' > libtoolize: linking file `m4/ltsugar.m4' > libtoolize: linking file `m4/ltversion.m4' > libtoolize: linking file `m4/lt~obsolete.m4' > libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am. > libtoolize: `AC_PROG_RANLIB' is rendered obsolete by `LT_INIT' > autoreconf > ./configure --prefix=/sw --with-plplotdir=/sw --with-ncursesdir=/sw -- > with-readlinedir=/sw --with-gsldir=/sw --with-netcdf=/sw --with-hdf=/ > sw --with-hdf5=/sw --with-Magick=/sw --with-fftw=/sw --without-python > --without-openmp -without-wxWidgets --disable-dependency-tracking > checking autoconf version... >=2.62 > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a thread-safe mkdir -p... ./install-sh -c -d > checking for gawk... no > checking for mawk... no > checking for nawk... no > checking for awk... awk > checking whether make sets $(MAKE)... yes > checking for g++... g++ > checking whether the C++ compiler works... yes > checking for C++ compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether we are using the GNU C++ compiler... yes > checking whether g++ accepts -g... yes > checking for style of include used by make... GNU > checking dependency style of g++... none > checking for ranlib... ranlib > checking build system type... i386-apple-darwin9.8.0 > checking host system type... i386-apple-darwin9.8.0 > checking how to print strings... printf > checking for gcc... gcc > checking whether we are using the GNU C compiler... yes > checking whether gcc accepts -g... yes > checking for gcc option to accept ISO C89... none needed > checking dependency style of gcc... none > checking for a sed that does not truncate output... /sw/bin/sed > checking for grep that handles long lines and -e... /usr/bin/grep > checking for egrep... /usr/bin/grep -E > checking for fgrep... /usr/bin/grep -F > checking for ld used by gcc... /usr/libexec/gcc/i686-apple- > darwin9/4.0.1/ld > checking if the linker (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) > is GNU ld... no > checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -p > checking the name lister (/usr/bin/nm -p) interface... BSD nm > checking whether ln -s works... yes > checking the maximum length of command line arguments... 196608 > checking whether the shell understands some XSI constructs... yes > checking whether the shell understands "+="... yes > checking how to convert i386-apple-darwin9.8.0 file names to i386- > apple-darwin9.8.0 format... func_convert_file_noop > checking how to convert i386-apple-darwin9.8.0 file names to toolchain > format... func_convert_file_noop > checking for /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld option to > reload object files... -r > checking for objdump... no > checking how to recognize dependent libraries... pass_all > checking for dlltool... no > checking how to associate runtime and link libraries... printf %s\n > checking for ar... ar > checking for archiver @FILE support... no > checking for strip... strip > checking for ranlib... (cached) ranlib > checking command to parse /usr/bin/nm -p output from gcc object... ok > checking for sysroot... no > checking for mt... no > checking if : is a manifest tool... no > checking for dsymutil... dsymutil > checking for nmedit... nmedit > checking for lipo... lipo > checking for otool... otool > checking for otool64... no > checking for -single_module linker flag... yes > checking for -exported_symbols_list linker flag... yes > checking for -force_load linker flag... no > checking how to run the C preprocessor... gcc -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking for dlfcn.h... yes > checking for objdir... .libs > checking if gcc supports -fno-rtti -fno-exceptions... no > checking for gcc option to produce PIC... -fno-common -DPIC > checking if gcc PIC flag -fno-common -DPIC works... yes > checking if gcc static flag -static works... no > checking if gcc supports -c -o file.o... yes > checking if gcc supports -c -o file.o... (cached) yes > checking whether the gcc linker (/usr/libexec/gcc/i686-apple- > darwin9/4.0.1/ld) supports shared libraries... yes > checking dynamic linker characteristics... darwin9.8.0 dyld > checking how to hardcode library paths into programs... immediate > checking whether stripping libraries is possible... yes > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... yes > checking whether to build static libraries... yes > checking how to run the C++ preprocessor... g++ -E > checking for ld used by g++... /usr/libexec/gcc/i686-apple- > darwin9/4.0.1/ld > checking if the linker (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) > is GNU ld... no > checking whether the g++ linker (/usr/libexec/gcc/i686-apple- > darwin9/4.0.1/ld) supports shared libraries... yes > checking for g++ option to produce PIC... -fno-common -DPIC > checking if g++ PIC flag -fno-common -DPIC works... yes > checking if g++ static flag -static works... no > checking if g++ supports -c -o file.o... yes > checking if g++ supports -c -o file.o... (cached) yes > checking whether the g++ linker (/usr/libexec/gcc/i686-apple- > darwin9/4.0.1/ld) supports shared libraries... yes > checking dynamic linker characteristics... darwin9.8.0 dyld > checking how to hardcode library paths into programs... immediate > checking for 64-bit OS... no > checking for library containing dlopen... none required > checking for malloc_zone_statistics... yes > checking for sbrk... yes > checking for mallinfo... no > checking malloc.h usability... no > checking malloc.h presence... no > checking for malloc.h... no > checking malloc/malloc.h usability... yes > checking malloc/malloc.h presence... yes > checking for malloc/malloc.h... yes > checking locale.h usability... yes > checking locale.h presence... yes > checking for locale.h... yes > checking for nexttoward... yes > checking for initscr in -lncurses... yes > checking for stifle_history in -lreadline... yes > checking for rl_get_screen_size in -lreadline... yes > checking for gzopen in -lz... yes > checking for gsl_ran_binomial_knuth in -lgsl... yes > checking for cblas_drot in -lgslcblas... yes > checking for plsexit in -lplplotcxxd... yes > checking for plGetDrvDir in -lplplotd... yes > > Warning! Dynamic drivers have to be disabled in plplot > to make plplot work with ImageMagic: > - use the -DENABLE_DYNDRIVERS=OFF cmake option when > compiling plplot to disable dynamic drivers in plplot, or > - use --with-Magick=no here to not use ImageMagick in GDL. > > checking for Magick++-config... /sw/bin/Magick++-config > checking for GetMagickVersion in -lMagick++... yes > checking for nc-config... no > checking for nc_open in -lnetcdf... yes > checking netcdfcpp.h usability... yes > checking netcdfcpp.h presence... yes > checking for netcdfcpp.h... yes > checking for Hopen in -ldfalt... no > checking if linking with SZIP helps... > checking for Hclose in -ldfalt... no > checking for Hopen in -ldf... yes > checking for SDstart in -lmfhdf... yes > checking for sd_nccreate in -lmfhdf... no > > Error! HDF4 needs to be configured with the --disable-netcdf option > in order to be used with the original netCDF library > (-alt suffixed HDF4 packages in case of Debian) > Check the INSTALL file of the HDF4 package for details > > (suitable Debian/Ubuntu package: libhdf4-alt-dev) > ^^^ > ### execution of ./configure failed, exit code 255 > Removing runtime build-lock... > Removing build-lock package... > /sw/bin/dpkg-lockwait -r fink-buildlock-gdl-0.9.1-1 > (Reading database ... 48320 files and directories currently installed.) > Removing fink-buildlock-gdl-0.9.1-1 ... > Failed: phase compiling: gdl-0.9.1-1 failed > > Before reporting any errors, please run "fink selfupdate" and > try again. If you continue to have issues, please check to see if the > FAQ on fink's website solves the problem. If not, ask on the fink-users > or fink-beginners mailing lists, with a carbon copy to the maintainer: > > Sebastien Maret <bma...@users.sourceforge.net> > > Note that this is preferable to emailing the maintainer directly, since > most fink package maintainers do not have access to all possible > hardware and software configurations. > > +++++++++++++++++++++++++++++++++++++++++ > > Marco Romoli > rom...@arcetri.astro.it > mrom...@unifi.it > > Dip. di Fisica e Astronomia > Sezione di Astronomia e Scienza dello Spazio > Universita' di Firenze > Largo E. Fermi 2 > 50125 Firenze, Italy > > Tel: +39-0552055233 > Fax: +39-0552055252 > > +++++++++++++++++++++++++++++++++++++++++ > > Look in /sw/src/fink.build/gdl-0.9.1-1/gdl-0.9.1/config.log at the point where it says "checking for sd_nccreate in -lmfhdf" (somewhere near line 19176). I get the following on one of my Fink setups: ... configure:19176: checking for sd_nccreate in -lmfhdf configure:19211: g++ -o conftest -g -O2 -I/sw64/include - -L/sw64/lib/plplot -L/sw64/lib -L/sw64/lib/pango-ft219/lib - -L/sw64/lib/fontconfig2/lib -L/usr/X11/lib -R/usr/X11/lib -lfreetype -lz - -Wl,-framework,CoreServices -Wl,-framework,ApplicationServices - -L/sw64/lib conftest.cpp -lmfhdf -lgslcblas -lgsl -L/sw64/lib -L/sw64 - -lncurses -L/sw64/lib -lreadline -lz -L/sw64/lib -lgsl -lgslcblas - -L/sw64/lib -lplplotd -lplplotcxxd -L/sw64/lib -lMagick++ -lMagickWand - -lMagickCore -L/sw64/lib -lnetcdf -L/sw64/lib -L/sw64/lib/hdf -lmfhdf - -ldf -ljpeg -lz -lsz >&5 ld: warning: directory '/sw64/lib/hdf' following -L not found configure:19218: $? = 0 configure:19241: result: yes configure:19291: checking for H5Fopen in -lhdf5 ... There may be more information there. - -- Alexander Hansen, Ph.D. Fink User Liaison http://finkakh.wordpress.com/ -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAk3TBqoACgkQB8UpO3rKjQ/NSQCbBjTwfVaeXPtUNbYsabAERrm6 h0kAn0ooFg+G/4ggLcObcvjnd8kKJ/vb =Rpw8 -----END PGP SIGNATURE----- ------------------------------------------------------------------------------ What Every C/C++ and Fortran developer Should Know! Read this article and learn how Intel has extended the reach of its next-generation tools to help Windows* and Linux* C/C++ and Fortran developers boost performance applications - including clusters. http://p.sf.net/sfu/intel-dev2devmay _______________________________________________ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
