On 4/7/13 1:51 PM, Viv Kendon wrote: > I think this is the relevant part of the logs, if not, I have the rest > of it. > > make[2]: Entering directory > `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpa > ck-ng-3.1.3/PARPACK' > /bin/sh ../libtool --tag=F77 --mode=link /sw/bin/mpif77 -g -O2 > -no-undefined > -version-info 2:0 -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib/openmpi -o > libparpa > ck.la -rpath /sw/lib ../SRC/libarpacksrc.la ../UTIL/libarpackutil.la > ../PARPACK > /SRC/MPI/libparpacksrcmpi.la ../PARPACK/UTIL/MPI/libparpackutilmpi.la > -ltatlas - > ltatlas > libtool: link: /sw/bin/gfortran-fsf-4.8 -dynamiclib -o > .libs/libparpack.2.dylib > -Wl,-force_load ../SRC/.libs/libarpacksrc.a -Wl,-force_load > ../UTIL/.libs/lib > arpackutil.a -Wl,-force_load ../PARPACK/SRC/MPI/.libs/libparpacksrcmpi.a > -Wl,-fo > rce_load ../PARPACK/UTIL/MPI/.libs/libparpackutilmpi.a -L/sw/lib > -L/sw/lib/open > mpi -ltatlas -O2 -Wl,-dead_strip_dylibs -install_name > /sw/lib/libparpack.2.d > ylib -compatibility_version 3 -current_version 3.0 -Wl,-single_module > Undefined symbols for architecture x86_64: > "_mpi_allreduce_", referenced from: > _psgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psgetv0.o) > _psnaitr_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaitr.o) > _psnaup2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaup2.o) > _pssaitr_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaitr.o) > _pssaup2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaup2.o) > _psnorm2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnorm2.o) > _pdgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdgetv0.o) > ... > "_mpi_comm_rank_", referenced from: > _psnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaupd.o) > _pssaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaupd.o) > _pdnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdnaupd.o) > _pdsaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdsaupd.o) > _pcnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pcnaupd.o) > _pcgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pcgetv0.o) > _pznaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pznaupd.o) > ... > ld: symbol(s) not found for architecture x86_64 > collect2: error: ld returned 1 exit status > make[2]: *** [libparpack.la] Error 1 > make[2]: Leaving directory > `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpack-ng-3.1.3/PARPACK' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory > `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpack-ng-3.1.3/PARPACK' > make: *** [all-recursive] Error 1 > ### execution of /tmp/fink.ZL1fo failed, exit code 2 > > Package manager version: 0.34.7 > Distribution version: selfupdate-rsync Sun Apr 7 20:33:31 2013, 10.7, > x86_64 > Trees: local/main stable/main > Xcode.app: 4.6.1 > Xcode command-line tools: 4.6.0.0.1.1362189000 > Max. Fink build jobs: 4 > > > open-mpi updated to 1.6.4-2 just prior to this failure. > > TIA, > -- Viv > ________________________________________________ > Dr Viv Kendon http://quantum.leeds.ac.uk/~viv > tel: +44 113 343 4864 Physics and Astronomy > Quantum Information Group University of Leeds >
Thanks for the report. It looks like arpack-ng upstream tweaked the parallel library build, and I naively didn't test that. A fixed version should be available shortly via selfupdate. -- Alexander Hansen, Ph.D. Fink User Liaison My package updates: http://finkakh.wordpress.com/ ------------------------------------------------------------------------------ Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
