On 4/9/13 3:42 AM, Viv Kendon wrote: > On Sun, 7 Apr 2013, Alexander Hansen wrote: > >> On 4/7/13 1:51 PM, Viv Kendon wrote: >>> I think this is the relevant part of the logs, if not, I have the rest >>> of it. >>> >>> make[2]: Entering directory >>> `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpa >>> ck-ng-3.1.3/PARPACK' >>> /bin/sh ../libtool --tag=F77 --mode=link /sw/bin/mpif77 -g -O2 >>> -no-undefined >>> -version-info 2:0 -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib/openmpi -o >>> libparpa >>> ck.la -rpath /sw/lib ../SRC/libarpacksrc.la ../UTIL/libarpackutil.la >>> ../PARPACK >>> /SRC/MPI/libparpacksrcmpi.la ../PARPACK/UTIL/MPI/libparpackutilmpi.la >>> -ltatlas - >>> ltatlas >>> libtool: link: /sw/bin/gfortran-fsf-4.8 -dynamiclib -o >>> .libs/libparpack.2.dylib >>> -Wl,-force_load ../SRC/.libs/libarpacksrc.a -Wl,-force_load >>> ../UTIL/.libs/lib >>> arpackutil.a -Wl,-force_load ../PARPACK/SRC/MPI/.libs/libparpacksrcmpi.a >>> -Wl,-fo >>> rce_load ../PARPACK/UTIL/MPI/.libs/libparpackutilmpi.a -L/sw/lib >>> -L/sw/lib/open >>> mpi -ltatlas -O2 -Wl,-dead_strip_dylibs -install_name >>> /sw/lib/libparpack.2.d >>> ylib -compatibility_version 3 -current_version 3.0 -Wl,-single_module >>> Undefined symbols for architecture x86_64: >>> "_mpi_allreduce_", referenced from: >>> _psgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psgetv0.o) >>> _psnaitr_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaitr.o) >>> _psnaup2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaup2.o) >>> _pssaitr_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaitr.o) >>> _pssaup2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaup2.o) >>> _psnorm2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnorm2.o) >>> _pdgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdgetv0.o) >>> ... >>> "_mpi_comm_rank_", referenced from: >>> _psnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaupd.o) >>> _pssaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaupd.o) >>> _pdnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdnaupd.o) >>> _pdsaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdsaupd.o) >>> _pcnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pcnaupd.o) >>> _pcgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pcgetv0.o) >>> _pznaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pznaupd.o) >>> ... >>> ld: symbol(s) not found for architecture x86_64 >>> collect2: error: ld returned 1 exit status >>> make[2]: *** [libparpack.la] Error 1 >>> make[2]: Leaving directory >>> `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpack-ng-3.1.3/PARPACK' >>> make[1]: *** [all-recursive] Error 1 >>> make[1]: Leaving directory >>> `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpack-ng-3.1.3/PARPACK' >>> make: *** [all-recursive] Error 1 >>> ### execution of /tmp/fink.ZL1fo failed, exit code 2 >>> >>> Package manager version: 0.34.7 >>> Distribution version: selfupdate-rsync Sun Apr 7 20:33:31 2013, 10.7, >>> x86_64 >>> Trees: local/main stable/main >>> Xcode.app: 4.6.1 >>> Xcode command-line tools: 4.6.0.0.1.1362189000 >>> Max. Fink build jobs: 4 >>> >>> >>> open-mpi updated to 1.6.4-2 just prior to this failure. >>> >>> TIA, >>> -- Viv >>> ________________________________________________ >>> Dr Viv Kendon http://quantum.leeds.ac.uk/~viv >>> tel: +44 113 343 4864 Physics and Astronomy >>> Quantum Information Group University of Leeds >>> >> >> Thanks for the report. It looks like arpack-ng upstream tweaked the >> parallel library build, and I naively didn't test that. A fixed >> version should be available shortly via selfupdate. > > I think what is failing now is that it is looking for the wrong source > package name? > > curl --connect-timeout 30 -f -L -A 'fink/0.34.7' -O > http://distfiles.master.finkmirrors.net/arpack-ng-mpi-3.1.3.tar.gz > % Total % Received % Xferd Average Speed Time Time Time > Current > Dload Upload Total Spent Left > Speed > 0 0 0 0 0 0 0 0 --:--:-- --:--:-- > --:--:-- 0 > curl: (22) The requested URL returned error: 404 > > i.e., -mpi shouldn't be in there? > > TIA, > -- Viv > ________________________________________________ > Dr Viv Kendon http://quantum.leeds.ac.uk/~viv > tel: +44 113 343 4864 Physics and Astronomy > Quantum Information Group University of Leeds >
Oops. I just checked in a fix which should be available via 'selfupdate' shortly. -- Alexander Hansen, Ph.D. Fink User Liaison My package updates: http://finkakh.wordpress.com/ ------------------------------------------------------------------------------ Precog is a next-generation analytics platform capable of advanced analytics on semi-structured data. The platform includes APIs for building apps and a phenomenal toolset for data science. Developers can use our toolset for easy data analysis & visualization. Get a free account! http://www2.precog.com/precogplatform/slashdotnewsletter _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
