On 4/9/13 8:04 AM, Viv Kendon wrote: > On Tue, 9 Apr 2013, Alexander Hansen wrote: > >> On 4/9/13 3:42 AM, Viv Kendon wrote: >>> On Sun, 7 Apr 2013, Alexander Hansen wrote: >>> >>>> On 4/7/13 1:51 PM, Viv Kendon wrote: >>>>> I think this is the relevant part of the logs, if not, I have the rest >>>>> of it. >>>>> >>>>> make[2]: Entering directory >>>>> `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpa >>>>> ck-ng-3.1.3/PARPACK' >>>>> /bin/sh ../libtool --tag=F77 --mode=link /sw/bin/mpif77 -g -O2 >>>>> -no-undefined >>>>> -version-info 2:0 -Wl,-dead_strip_dylibs -L/sw/lib >>>>> -L/sw/lib/openmpi -o >>>>> libparpa >>>>> ck.la -rpath /sw/lib ../SRC/libarpacksrc.la ../UTIL/libarpackutil.la >>>>> ../PARPACK >>>>> /SRC/MPI/libparpacksrcmpi.la ../PARPACK/UTIL/MPI/libparpackutilmpi.la >>>>> -ltatlas - >>>>> ltatlas >>>>> libtool: link: /sw/bin/gfortran-fsf-4.8 -dynamiclib -o >>>>> .libs/libparpack.2.dylib >>>>> -Wl,-force_load ../SRC/.libs/libarpacksrc.a -Wl,-force_load >>>>> ../UTIL/.libs/lib >>>>> arpackutil.a -Wl,-force_load >>>>> ../PARPACK/SRC/MPI/.libs/libparpacksrcmpi.a >>>>> -Wl,-fo >>>>> rce_load ../PARPACK/UTIL/MPI/.libs/libparpackutilmpi.a -L/sw/lib >>>>> -L/sw/lib/open >>>>> mpi -ltatlas -O2 -Wl,-dead_strip_dylibs -install_name >>>>> /sw/lib/libparpack.2.d >>>>> ylib -compatibility_version 3 -current_version 3.0 -Wl,-single_module >>>>> Undefined symbols for architecture x86_64: >>>>> "_mpi_allreduce_", referenced from: >>>>> _psgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psgetv0.o) >>>>> _psnaitr_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaitr.o) >>>>> _psnaup2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaup2.o) >>>>> _pssaitr_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaitr.o) >>>>> _pssaup2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaup2.o) >>>>> _psnorm2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnorm2.o) >>>>> _pdgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdgetv0.o) >>>>> ... >>>>> "_mpi_comm_rank_", referenced from: >>>>> _psnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaupd.o) >>>>> _pssaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaupd.o) >>>>> _pdnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdnaupd.o) >>>>> _pdsaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdsaupd.o) >>>>> _pcnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pcnaupd.o) >>>>> _pcgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pcgetv0.o) >>>>> _pznaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pznaupd.o) >>>>> ... >>>>> ld: symbol(s) not found for architecture x86_64 >>>>> collect2: error: ld returned 1 exit status >>>>> make[2]: *** [libparpack.la] Error 1 >>>>> make[2]: Leaving directory >>>>> `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpack-ng-3.1.3/PARPACK' >>>>> >>>>> make[1]: *** [all-recursive] Error 1 >>>>> make[1]: Leaving directory >>>>> `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpack-ng-3.1.3/PARPACK' >>>>> >>>>> make: *** [all-recursive] Error 1 >>>>> ### execution of /tmp/fink.ZL1fo failed, exit code 2 >>>>> >>>>> Package manager version: 0.34.7 >>>>> Distribution version: selfupdate-rsync Sun Apr 7 20:33:31 2013, 10.7, >>>>> x86_64 >>>>> Trees: local/main stable/main >>>>> Xcode.app: 4.6.1 >>>>> Xcode command-line tools: 4.6.0.0.1.1362189000 >>>>> Max. Fink build jobs: 4 >>>>> >>>>> >>>>> open-mpi updated to 1.6.4-2 just prior to this failure. >>>>> >>>>> TIA, >>>>> -- Viv >>>>> ________________________________________________ >>>>> Dr Viv Kendon http://quantum.leeds.ac.uk/~viv >>>>> tel: +44 113 343 4864 Physics and Astronomy >>>>> Quantum Information Group University of Leeds >>>>> >>>> >>>> Thanks for the report. It looks like arpack-ng upstream tweaked the >>>> parallel library build, and I naively didn't test that. A fixed >>>> version should be available shortly via selfupdate. >>> >>> I think what is failing now is that it is looking for the wrong source >>> package name? >>> >>> curl --connect-timeout 30 -f -L -A 'fink/0.34.7' -O >>> http://distfiles.master.finkmirrors.net/arpack-ng-mpi-3.1.3.tar.gz >>> % Total % Received % Xferd Average Speed Time Time Time >>> Current >>> Dload Upload Total Spent Left >>> Speed >>> 0 0 0 0 0 0 0 0 --:--:-- --:--:-- >>> --:--:-- 0 >>> curl: (22) The requested URL returned error: 404 >>> >>> i.e., -mpi shouldn't be in there? >>> >> Oops. I just checked in a fix which should be available via >> 'selfupdate' shortly. > > It is still 404: > > curl --connect-timeout 30 -f -L -A 'fink/0.34.7' -O > http://distfiles.master.finkmirrors.net/arpack-3.1.3.tar.gz > % Total % Received % Xferd Average Speed Time Time Time > Current > Dload Upload Total Spent Left > Speed > ^M 0 0 0 0 0 0 0 0 --:--:-- --:--:-- > --:--:-- 0^M 0 0 0 0 0 0 0 0 --:--:-- > 0:00:01 --:--:-- 0 > curl: (22) The requested URL returned error: 404 > > > On my other machine I have to following sources: > > arpack-ng-3.1.3.tar.gz arpack-ng_3.1.2.tar.gz arpack_3.0.1.tar.gz > arpack-ng_3.1.0.tar.gz arpack-patch.tar.gz arpack_3.0.2.tar.gz > arpack-ng_3.1.1.tar.gz arpack96.tar.gz > > So it seems to have sometimes had -ng and sometimes not, but maybe it > needs it now? > > TIA, > -- Viv > ________________________________________________ > Dr Viv Kendon http://quantum.leeds.ac.uk/~viv > tel: +44 113 343 4864 Physics and Astronomy > Quantum Information Group University of Leeds >
Sorry about that--I wasn't fully awake yet. I put up a new version _and_ verified that it fetches the tarball. :-) -- Alexander Hansen, Ph.D. Fink User Liaison My package updates: http://finkakh.wordpress.com/ ------------------------------------------------------------------------------ Precog is a next-generation analytics platform capable of advanced analytics on semi-structured data. The platform includes APIs for building apps and a phenomenal toolset for data science. Developers can use our toolset for easy data analysis & visualization. Get a free account! http://www2.precog.com/precogplatform/slashdotnewsletter _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
