On Sun, 7 Apr 2013, Alexander Hansen wrote: > On 4/7/13 1:51 PM, Viv Kendon wrote: >> I think this is the relevant part of the logs, if not, I have the rest >> of it. >> >> make[2]: Entering directory >> `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpa >> ck-ng-3.1.3/PARPACK' >> /bin/sh ../libtool --tag=F77 --mode=link /sw/bin/mpif77 -g -O2 >> -no-undefined >> -version-info 2:0 -Wl,-dead_strip_dylibs -L/sw/lib -L/sw/lib/openmpi -o >> libparpa >> ck.la -rpath /sw/lib ../SRC/libarpacksrc.la ../UTIL/libarpackutil.la >> ../PARPACK >> /SRC/MPI/libparpacksrcmpi.la ../PARPACK/UTIL/MPI/libparpackutilmpi.la >> -ltatlas - >> ltatlas >> libtool: link: /sw/bin/gfortran-fsf-4.8 -dynamiclib -o >> .libs/libparpack.2.dylib >> -Wl,-force_load ../SRC/.libs/libarpacksrc.a -Wl,-force_load >> ../UTIL/.libs/lib >> arpackutil.a -Wl,-force_load ../PARPACK/SRC/MPI/.libs/libparpacksrcmpi.a >> -Wl,-fo >> rce_load ../PARPACK/UTIL/MPI/.libs/libparpackutilmpi.a -L/sw/lib >> -L/sw/lib/open >> mpi -ltatlas -O2 -Wl,-dead_strip_dylibs -install_name >> /sw/lib/libparpack.2.d >> ylib -compatibility_version 3 -current_version 3.0 -Wl,-single_module >> Undefined symbols for architecture x86_64: >> "_mpi_allreduce_", referenced from: >> _psgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psgetv0.o) >> _psnaitr_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaitr.o) >> _psnaup2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaup2.o) >> _pssaitr_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaitr.o) >> _pssaup2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaup2.o) >> _psnorm2_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnorm2.o) >> _pdgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdgetv0.o) >> ... >> "_mpi_comm_rank_", referenced from: >> _psnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-psnaupd.o) >> _pssaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pssaupd.o) >> _pdnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdnaupd.o) >> _pdsaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pdsaupd.o) >> _pcnaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pcnaupd.o) >> _pcgetv0_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pcgetv0.o) >> _pznaupd_ in libparpacksrcmpi.a(libparpacksrcmpi_la-pznaupd.o) >> ... >> ld: symbol(s) not found for architecture x86_64 >> collect2: error: ld returned 1 exit status >> make[2]: *** [libparpack.la] Error 1 >> make[2]: Leaving directory >> `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpack-ng-3.1.3/PARPACK' >> make[1]: *** [all-recursive] Error 1 >> make[1]: Leaving directory >> `/sw/src/fink.build/arpack-ng-mpi-atlas-3.1.3-1/arpack-ng-3.1.3/PARPACK' >> make: *** [all-recursive] Error 1 >> ### execution of /tmp/fink.ZL1fo failed, exit code 2 >> >> Package manager version: 0.34.7 >> Distribution version: selfupdate-rsync Sun Apr 7 20:33:31 2013, 10.7, >> x86_64 >> Trees: local/main stable/main >> Xcode.app: 4.6.1 >> Xcode command-line tools: 4.6.0.0.1.1362189000 >> Max. Fink build jobs: 4 >> >> >> open-mpi updated to 1.6.4-2 just prior to this failure. >> >> TIA, >> -- Viv >> ________________________________________________ >> Dr Viv Kendon http://quantum.leeds.ac.uk/~viv >> tel: +44 113 343 4864 Physics and Astronomy >> Quantum Information Group University of Leeds >> > > Thanks for the report. It looks like arpack-ng upstream tweaked the parallel > library build, and I naively didn't test that. A fixed version should be > available shortly via selfupdate.
I think what is failing now is that it is looking for the wrong source package name? curl --connect-timeout 30 -f -L -A 'fink/0.34.7' -O http://distfiles.master.finkmirrors.net/arpack-ng-mpi-3.1.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 i.e., -mpi shouldn't be in there? TIA, -- Viv ________________________________________________ Dr Viv Kendon http://quantum.leeds.ac.uk/~viv tel: +44 113 343 4864 Physics and Astronomy Quantum Information Group University of Leeds ------------------------------------------------------------------------------ Precog is a next-generation analytics platform capable of advanced analytics on semi-structured data. The platform includes APIs for building apps and a phenomenal toolset for data science. Developers can use our toolset for easy data analysis & visualization. Get a free account! http://www2.precog.com/precogplatform/slashdotnewsletter _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
