Does the js interface output anything (as in $ cat /dev/input/js0)? If yes, then you might be able to fix the problem by simply calibrating ($ jscal /dev/input/js0). Some people are convinced that USB joysticks don't need calibration under Linux, but that's wrong. And some of the sticks are so extremely uncalibrated that they don't do anything useful at all.
The buttons don't respond either, and the yoke worked fine under the (patched) 2.4.* kernels. There's definitely a problem, still, with the Linux 2.6.* HID support.
All the best,
David
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