Hi Ed, Can you please do
"grep _CA2 $FREESURFER_HOME/FreeSurferColorLUT.txt" and let me know what the result is? Thanks, and sorry this seems so difficult to sort out. Koen On Wed, Apr 4, 2012 at 6:14 AM, Ed Gronenschild <ed.gronensch...@np.unimaas.nl> wrote: > Hi Koen, > > As already mentioned, I'm using v5.1.0, Mac Intel > Leopard version. > The voxel values of posterior_left_CA2-3.mgz and > posterior_right_CA2-3.mgz are between 0 and 255, > if that is what you mean by "results". > By the way: I always get the 8 lines with "invalid > drawable" messages from freeview. > > Ed > > > On 3 Apr 2012, at 21:29, Koen Van Leemput wrote: > >> Hi Ed, >> >> What version of the FreeSurfer build are you using? >> >> Also, could you please let me know what the result is of "ls >> posterior_left_CA2*"? >> >> Thanks, >> >> Koen >> >> >> >> On Tue, Mar 27, 2012 at 8:29 AM, Ed Gronenschild >> <ed.gronensch...@np.unimaas.nl> wrote: >>> >>> Hi, >>> >>> I followed the instructions to visualize the hippocampal subfield >>> segmentation >>> by entering the command (in the subject's mri directory) >>> >>> freeview nu.mgz \ >>>> >>>> -p-labels posterior_left_* posterior_Left-Hippocampus.mgz \ >>>> -p-labels posterior_right_* posterior_Right-Hippocampus.mgz \ >>>> -p-prefix posterior_ -p-lut $FREESURFER_HOME/FreeSurferColorLUT.txt >>> >>> >>> and got the following messages: >>> >>> 2012-03-27 11:54:37.043 freeview.bin[34414:907] invalid drawable >>> 2012-03-27 11:54:37.083 freeview.bin[34414:907] invalid drawable >>> 2012-03-27 11:54:37.154 freeview.bin[34414:907] invalid drawable >>> 2012-03-27 11:54:37.156 freeview.bin[34414:907] invalid drawable >>> 2012-03-27 11:54:37.168 freeview.bin[34414:907] invalid drawable >>> 2012-03-27 11:54:37.170 freeview.bin[34414:907] invalid drawable >>> 2012-03-27 11:54:37.182 freeview.bin[34414:907] invalid drawable >>> 2012-03-27 11:54:37.184 freeview.bin[34414:907] invalid drawable >>> QObject::connect: Connecting from QAbstractButton::toggled(bool) to >>> COMPAT slot (QGroupBox::setShown(bool)) >>> QObject::connect: Connecting from QAbstractButton::toggled(bool) to >>> COMPAT slot (QGroupBox::setShown(bool)) >>> CTABrgbAtIndexi: index -1 was OOB >>> CTABrgbAtIndexi: index -1 was OOB >>> Can not find index for color name left_CA2-3 >>> CTABrgbAtIndexi: index -1 was OOB >>> CTABrgbAtIndexi: index -1 was OOB >>> CTABrgbAtIndexi: index -1 was OOB >>> Can not find index for color name right_CA2-3 >>> CTABrgbAtIndexi: index -1 was OOB >>> >>> Nothing was shown on top of nu.mgz. All the left and righ posterior files >>> are present. >>> >>> (Mac OS X 10.6.8, FreeSurfer version 5.1.0) >>> >>> Cheers, >>> Ed >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
