Hi Koen, No worries. The result of grep is:
500 right_CA2_3 17 85 136 0 550 left_CA2_3 17 85 137 0 Ed On 4 Apr 2012, at 12:41, Koen Van Leemput wrote: > Hi Ed, > > Can you please do > > "grep _CA2 $FREESURFER_HOME/FreeSurferColorLUT.txt" > > and let me know what the result is? > > Thanks, and sorry this seems so difficult to sort out. > > Koen > > > On Wed, Apr 4, 2012 at 6:14 AM, Ed Gronenschild > <ed.gronensch...@np.unimaas.nl> wrote: >> Hi Koen, >> >> As already mentioned, I'm using v5.1.0, Mac Intel >> Leopard version. >> The voxel values of posterior_left_CA2-3.mgz and >> posterior_right_CA2-3.mgz are between 0 and 255, >> if that is what you mean by "results". >> By the way: I always get the 8 lines with "invalid >> drawable" messages from freeview. >> >> Ed >> >> >> On 3 Apr 2012, at 21:29, Koen Van Leemput wrote: >> >>> Hi Ed, >>> >>> What version of the FreeSurfer build are you using? >>> >>> Also, could you please let me know what the result is of "ls >>> posterior_left_CA2*"? >>> >>> Thanks, >>> >>> Koen >>> >>> >>> >>> On Tue, Mar 27, 2012 at 8:29 AM, Ed Gronenschild >>> <ed.gronensch...@np.unimaas.nl> wrote: >>>> >>>> Hi, >>>> >>>> I followed the instructions to visualize the hippocampal subfield >>>> segmentation >>>> by entering the command (in the subject's mri directory) >>>> >>>> freeview nu.mgz \ >>>>> >>>>> -p-labels posterior_left_* posterior_Left-Hippocampus.mgz \ >>>>> -p-labels posterior_right_* posterior_Right-Hippocampus.mgz \ >>>>> -p-prefix posterior_ -p-lut $FREESURFER_HOME/ >>>>> FreeSurferColorLUT.txt >>>> >>>> >>>> and got the following messages: >>>> >>>> 2012-03-27 11:54:37.043 freeview.bin[34414:907] invalid drawable >>>> 2012-03-27 11:54:37.083 freeview.bin[34414:907] invalid drawable >>>> 2012-03-27 11:54:37.154 freeview.bin[34414:907] invalid drawable >>>> 2012-03-27 11:54:37.156 freeview.bin[34414:907] invalid drawable >>>> 2012-03-27 11:54:37.168 freeview.bin[34414:907] invalid drawable >>>> 2012-03-27 11:54:37.170 freeview.bin[34414:907] invalid drawable >>>> 2012-03-27 11:54:37.182 freeview.bin[34414:907] invalid drawable >>>> 2012-03-27 11:54:37.184 freeview.bin[34414:907] invalid drawable >>>> QObject::connect: Connecting from QAbstractButton::toggled(bool) to >>>> COMPAT slot (QGroupBox::setShown(bool)) >>>> QObject::connect: Connecting from QAbstractButton::toggled(bool) to >>>> COMPAT slot (QGroupBox::setShown(bool)) >>>> CTABrgbAtIndexi: index -1 was OOB >>>> CTABrgbAtIndexi: index -1 was OOB >>>> Can not find index for color name left_CA2-3 >>>> CTABrgbAtIndexi: index -1 was OOB >>>> CTABrgbAtIndexi: index -1 was OOB >>>> CTABrgbAtIndexi: index -1 was OOB >>>> Can not find index for color name right_CA2-3 >>>> CTABrgbAtIndexi: index -1 was OOB >>>> >>>> Nothing was shown on top of nu.mgz. All the left and righ >>>> posterior files >>>> are present. >>>> >>>> (Mac OS X 10.6.8, FreeSurfer version 5.1.0) >>>> >>>> Cheers, >>>> Ed >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person >>>> to whom it >>>> is >>>> addressed. If you believe this e-mail was sent to you in error >>>> and the >>>> e-mail >>>> contains patient information, please contact the Partners >>>> Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent >>>> to you in >>>> error >>>> but does not contain patient information, please contact the >>>> sender and >>>> properly >>>> dispose of the e-mail. >>>> >> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
