Hi Lucia - Does it work if you remove the extra blank line at the end of the bvecs file?
a.y On Thu, 26 Sep 2013, Lucia Billeci wrote: > Dear all, > > I am trying to apply TRACULA on my DATA (GE data) but when I run the > following command: > > trac-all -prep -c /Users/Desktop/FreesurferData/SUBJECT1/dmrirc_subject1 > > after eddy current correction, I obtain this error: > > mv -f /Users/luciabilleci/Desktop/FreesurferData/FRANCINI1/dmri/bvecs > /Users/luciabilleci/Desktop/FreesurferData/FRANCINI1/dmri/bvecs.norot > xfmrot /Users/luciabilleci/Desktop/FreesurferData/FRANCINI1/dmri/dwi.ecclog > /Users/luciabilleci/Desktop/FreesurferData/FRANCINI1/dmri/bvecs.norot > /Users/luciabilleci/Desktop/FreesurferData/FRANCINI1/dmri/bvecs > printf: -.999993: expected numeric value > printf: -.003594: expected numeric value > printf: .000852: expected numeric value > R: Subscript out of range. > R: Subscript out of range. > R: Subscript out of range. > fslroi /Users/luciabilleci/Desktop/FreesurferData/FRANCINI1/dmri/dwi.nii.gz > /Users/luciabilleci/Desktop/FreesurferData/FRANCINI1/dmri/lowb.nii.gz 0 > > Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> > fslroi <input> <output> <tmin> <tsize> > > fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> > <tmin> <tsize> > Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for > a size will set it to the full image extent for that dimension. > Darwin dhcp225.ifc.cnr.it 11.4.2 Darwin Kernel Version 11.4.2: Thu Aug 23 > 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64 x86_64 > > trac-preproc exited with ERRORS at Gio 26 Set 2013 10:12:38 CEST > > I attach my bvals and bvecs > Could you help me? > > Thanks > Lucia > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
