yes
On 7/21/17 5:24 AM, Jordi Pegueroles wrote: > Thank you Doug. So, instead of running mri_surfcluster I should run > mri_glmfit-sim with the --fwhm-override with the smoothing obtained > from the residuals of the lme model. > > Thanks again, > > A 2017-07-18 22:09, Douglas N Greve escrigué: >> Not sure. It might be more accurate. Once you have the FWHM you want, >> you can run mri_glmfit-sim with --fwhm-override >> >> >> On 07/17/2017 05:43 PM, Jordi Pegueroles wrote: >>> Dear FS experts, >>> >>> I was wondering if someone had performed multiple comparisons (ie >>> monte-carlo) with the LME analyses. I have found a thread >>> (https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg40195.html) >>> where Doug recommends to run a GLM fit with the same data and then >>> overwrite the sig.mgh file with the LME one. >>> >>> My question is if is not more accurate to estimate the residuals >>> from the LME model, then compute the relative smooth of the data >>> with the mris_fwhm command and pass it as an argument in the >>> mri_surfcluster command (mri_surfcluster --in $direct1/sig.mgh --csd >>> /Applications/freesurfer/average/mult-comp-cor/fsaverage/${hemi}/cortex/fwhm${rfwhm}/abs/th13/mc-z.csd >>> >>> --cwsig $direct1/mc.abs.th13.sig.cluster.mgh --vwsig >>> $direct1/abs.th13.sig.vertex.mgh --cwpvalthresh 0.05 --surf white). >>> >>> Thanks in advance. >>> >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
