you can visually check it. Also, it is not super critical

On 08/10/2017 01:45 PM, Yagmur Ozdemir 19 wrote:
> I would prefer to have it run with the tal registration, as I am not entirely 
> sure if the registration works ok as it was made in another software, but 
> worst case I will try that option. Thank you!
>
> Idil
> ________________________________________
> From: freesurfer-boun...@nmr.mgh.harvard.edu 
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve 
> [gr...@nmr.mgh.harvard.edu]
> Sent: Thursday, August 10, 2017 1:18 AM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Talairach error
>
> It is failing the tal registration check. Does the registration look ok?
> If so, then run with -no-talcheck.
>
>
> On 08/09/2017 02:24 PM, Yagmur Ozdemir 19 wrote:
>> Hello FreeSurfer experts,
>>
>> I have been running into a consistent problem of Talairach alignment
>> error in my recon-all for some of my subjects, even though I was able
>> to get a completed recon-all for other subjects by using the same
>> procedure to obtain my nifti files. I have attached the recon-all logs
>> of a successful and a Talairach failed subject respectively, and as I
>> try to understand the difference, in the successful one this was tried
>> the last: INFO: Trying MINC mritotal to perform Talairach align...
>> then failed, then there is a "New invocation of recon-all " which
>> succeeded. I do not think I made that invocation. Could someone help
>> me figure out what I am missing, and how can I make recon-all continue
>> as I somehow did previously?
>>
>> Thank you so much!
>> Idil
>>
>>
>> _______________________________________________
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>> Freesurfer@nmr.mgh.harvard.edu
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> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
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-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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