you can visually check it. Also, it is not super critical
On 08/10/2017 01:45 PM, Yagmur Ozdemir 19 wrote: > I would prefer to have it run with the tal registration, as I am not entirely > sure if the registration works ok as it was made in another software, but > worst case I will try that option. Thank you! > > Idil > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Thursday, August 10, 2017 1:18 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Talairach error > > It is failing the tal registration check. Does the registration look ok? > If so, then run with -no-talcheck. > > > On 08/09/2017 02:24 PM, Yagmur Ozdemir 19 wrote: >> Hello FreeSurfer experts, >> >> I have been running into a consistent problem of Talairach alignment >> error in my recon-all for some of my subjects, even though I was able >> to get a completed recon-all for other subjects by using the same >> procedure to obtain my nifti files. I have attached the recon-all logs >> of a successful and a Talairach failed subject respectively, and as I >> try to understand the difference, in the successful one this was tried >> the last: INFO: Trying MINC mritotal to perform Talairach align... >> then failed, then there is a "New invocation of recon-all " which >> succeeded. I do not think I made that invocation. Could someone help >> me figure out what I am missing, and how can I make recon-all continue >> as I somehow did previously? >> >> Thank you so much! >> Idil >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer