looks like the acquisition is not what you would need to run FreeSurfer
on. Looking at the log I think your input is a T2-weighted image (we
require a T1) with a slice thickness of 9mm (we require all voxel
dimensions to be <=1.5mm or so)
cheers
Bruce
On Thu, 8 Feb 2018, Z Hessam wrote:
sure...
with first code i convert *.dcm files.
with second code i want to segment data:
1) recon-all -i /media/hessam91/driver2/data/1.dcm -autorecon1 -subjid dyegmoh
2) recon-all -s dyegmoh -all
and the log file is attached(recon-all_dyegmoh.log).
On Thu, Feb 8, 2018 at 7:05 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
can you send us the complete command you ran, the entire screen output
and the
recon-all.log file?
cheers
Bruce
On Thu, 8 Feb 2018, Z Hessam wrote:
Hello FreeSurfer develpers
I'm attempting to run " recon-all " command on a file of dicom
data, and
encounter with an error
command:
recon-all -s dyegmoh exited with ERRORS at Thu Feb 8 17:08:16
+0330 2018
how can i understand why this error happens and what should i do
to solve
it?
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