This one has 9mm thick slices. This web page:
https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferBeginnersGuide
has some discussion about what types of inputs are needed.
cheers
Bruce
On Mon, 19 Mar 2018, Z Hessam wrote:
hello, i have problem again with a new data set.
this is the recon-all.log file in attach
thanks a lot
On Fri, Feb 9, 2018 at 2:22 PM, Z Hessam <z.hes...@gmail.com> wrote:
thank you for your attention
regards
On Fri, Feb 9, 2018 at 1:04 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
looks like the acquisition is not what you would need to run FreeSurfer
on.
Looking at the log I think your input is a T2-weighted image (we require
a T1)
with a slice thickness of 9mm (we require all voxel dimensions to be
<=1.5mm or
so)
cheers
Bruce
On Thu, 8 Feb 2018, Z Hessam wrote:
sure...
with first code i convert *.dcm files.
with second code i want to segment data:
1) recon-all -i /media/hessam91/driver2/data/1.dcm -autorecon1
-subjid
dyegmoh
2) recon-all -s dyegmoh -all
and the log file is attached(recon-all_dyegmoh.log).
On Thu, Feb 8, 2018 at 7:05 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu> wrote:
can you send us the complete command you ran, the entire
screen
output and the
recon-all.log file?
cheers
Bruce
On Thu, 8 Feb 2018, Z Hessam wrote:
Hello FreeSurfer develpers
I'm attempting to run " recon-all " command on a file of
dicom data, and
encounter with an error
command:
recon-all -s dyegmoh exited with ERRORS at Thu Feb 8
17:08:16 +0330 2018
how can i understand why this error happens and what
should i do to solve
it?
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