Your input here is a localizer image: Protocol t2_haste_localizer_p2
On Mon, Mar 19, 2018 at 12:51 PM, Z Hessam <z.hes...@gmail.com> wrote: > > hello, i have problem again with a new data set. > this is the recon-all.log file in attach > > thanks a lot > > > On Fri, Feb 9, 2018 at 2:22 PM, Z Hessam <z.hes...@gmail.com> wrote: >> >> thank you for your attention >> >> regards >> >> On Fri, Feb 9, 2018 at 1:04 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: >>> >>> looks like the acquisition is not what you would need to run FreeSurfer on. Looking at the log I think your input is a T2-weighted image (we require a T1) with a slice thickness of 9mm (we require all voxel dimensions to be <=1.5mm or so) >>> >>> >>> cheers >>> Bruce >>> >>> >>> >>> On Thu, 8 Feb 2018, Z Hessam wrote: >>> >>>> sure... >>>> with first code i convert *.dcm files. >>>> with second code i want to segment data: >>>> >>>> 1) recon-all -i /media/hessam91/driver2/data/1.dcm -autorecon1 -subjid dyegmoh >>>> 2) recon-all -s dyegmoh -all >>>> >>>> and the log file is attached(recon-all_dyegmoh.log). >>>> >>>> >>>> >>>> >>>> On Thu, Feb 8, 2018 at 7:05 PM, Bruce Fischl < fis...@nmr.mgh.harvard.edu> wrote: >>>> can you send us the complete command you ran, the entire screen output and the >>>> recon-all.log file? >>>> >>>> cheers >>>> Bruce >>>> On Thu, 8 Feb 2018, Z Hessam wrote: >>>> >>>> Hello FreeSurfer develpers >>>> I'm attempting to run " recon-all " command on a file of dicom data, and >>>> encounter with an error >>>> command: >>>> >>>> recon-all -s dyegmoh exited with ERRORS at Thu Feb 8 17:08:16 +0330 2018 >>>> >>>> how can i understand why this error happens and what should i do to solve >>>> it? >>>> >>>> >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to whom it is >>>> addressed. If you believe this e-mail was sent to you in error and the e-mail >>>> contains patient information, please contact the Partners Compliance HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to you in error >>>> but does not contain patient information, please contact the sender and properly >>>> dispose of the e-mail. >>>> >>>> >>>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the e-mail >>> contains patient information, please contact the Partners Compliance HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in error >>> but does not contain patient information, please contact the sender and properly >>> dispose of the e-mail. >>> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. >
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