Hi Bruce, did you solve out my problem?
Naka ----- Mail original ----- De: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> À: "freesurfer" <freesurfer@nmr.mgh.harvard.edu> Envoyé: Mardi 13 Mars 2018 16:05:14 Objet: Re: [Freesurfer] Freesurfer6.0 failure Hi Naka we have tracked down this problem and should have a patch soon cheers Bruce On Tue, 13 Mar 2018, Naka Beguedou wrote: > > > Hello, > I allow myself to send you this mail in order to have some informations. we > have a problem concerning the segmentation of FREESURFER6.0 > Indeed for T1image of one subject, the surface segmentation(figure1) is > accurate but there is failure on the cortical segmentation(figure2) of the > right hemisphere for the free surfer 6.0. > For that subject, we relaunched the free surfer6.0 , but still the same > problem. > Here is the command we used to relaunch the free surfer6.0 for that subject: > recon-all -all -FLAIR FLAIR/FLAIR_585.nii.gz -i T1/T1_585.nii.gz > -brainstem-structures -3T -contrasurfreg -qcache -subjid SHARE0585_2 -sd > /scratch/alaurent006/freesurfer_end -FLAIRpial > > What can we do about it? > > Thanks > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- BEGUEDOU NAKA Attachée de Recherche Clinique INSERM U1219 Épidémiologie et Biostatistique Université de Bordeaux naka.begue...@u-bordeaux.fr 05 47 30 42 24 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
