Don't log in, select the "I am not a Martinos Center user" When it asks for recipients, use gr...@nmr.mgh.harvard.edu
On 05/17/2018 03:19 AM, Naka Beguedou wrote: > External Email - Use Caution > > HI Douglas, > sorry for my late reply. I can't log in to > https://gate.nmr.mgh.harvard.edu/filedrop2 > > > ----- Mail original ----- > De: "Douglas N. Greve" <dgr...@mgh.harvard.edu> > À: "freesurfer" <freesurfer@nmr.mgh.harvard.edu> > Envoyé: Mercredi 4 Avril 2018 17:23:25 > Objet: Re: [Freesurfer] Freesurfer6.0 failure > > Hi Naka, sorry, this dropped through the cracks. I had solved a similar > problem for someone else and thought they were the same problem! Can you > upload your subject's dir to our file drop? > https://gate.nmr.mgh.harvard.edu/filedrop2 > > > > On 04/04/2018 04:14 AM, Naka Beguedou wrote: >> Hi Bruce, >> >> did you solve out my problem? >> >> Naka >> >> >> ----- Mail original ----- >> De: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> >> À: "freesurfer" <freesurfer@nmr.mgh.harvard.edu> >> Envoyé: Mardi 13 Mars 2018 16:05:14 >> Objet: Re: [Freesurfer] Freesurfer6.0 failure >> >> Hi Naka >> >> we have tracked down this problem and should have a patch soon >> >> cheers >> Bruce >> >> >> On Tue, 13 Mar 2018, Naka Beguedou wrote: >> >>> Hello, >>> I allow myself to send you this mail in order to have some informations. we >>> have a problem concerning the segmentation of FREESURFER6.0 >>> Indeed for T1image of one subject, the surface segmentation(figure1) is >>> accurate but there is failure on the cortical segmentation(figure2) of the >>> right hemisphere for the free surfer 6.0. >>> For that subject, we relaunched the free surfer6.0 , but still the same >>> problem. >>> Here is the command we used to relaunch the free surfer6.0 for that subject: >>> recon-all -all -FLAIR FLAIR/FLAIR_585.nii.gz -i T1/T1_585.nii.gz >>> -brainstem-structures -3T -contrasurfreg -qcache -subjid SHARE0585_2 -sd >>> /scratch/alaurent006/freesurfer_end -FLAIRpial >>> >>> What can we do about it? >>> >>> Thanks >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
