External Email - Use Caution Hi Rueben,
I am afraid I don't understand your question. The Yeo networks are available in fsaverage and FSL MNI152 space. If your data is already in fsaverage or FSL MNI152 space, you can simply use the networks directly without running recon-all. Can you elaborate more on what you are trying to do? Regards, Thomas On Mon, Aug 15, 2022 at 7:20 AM Addison, Reuben <[email protected]> wrote: > The Yeo et al, 2011 template > > Reuben A. > > Get Outlook for iOS > <https://secure-web.cisco.com/15lbsHnRV10gWZWym8hAq7jnJ3r-m7bvLeyJenniJmGOpMIsZEHKqBDJ2eF3NGSXqUdErU2WDGT2YW_lu4PS3Vof6Y948sJa49P63oeRql5Dma74Aum1LPqGWiqw9svLE3I-vbYDObRpvWjqMNibRyQRE_AxMxWkqa4Q0FtTE4R-x-ITxj5eg61OpzU--92q-aYXm3PZkrs9uUctKbwftQOE4PxNQ98bmm21Fm8nkOyNYJ9MO38zazIm4tNy-J2GigE0M_SzRmvBMmPQoTMz86mEnqv2TqH8UGPMG_MYSS6eyUvqOhocj7cb9agzXFqxGlXS25y0e2fUg2jCdk5LTdQ/https%3A%2F%2Faka.ms%2Fo0ukef> > ------------------------------ > *From:* [email protected] < > [email protected]> on behalf of Thomas Yeo < > [email protected]> > *Sent:* Sunday, August 14, 2022 6:59:51 PM > *To:* Freesurfer support list <[email protected]> > *Subject:* Re: [Freesurfer] Parcellation issue > > > External Email - Use Caution > > Hi Reuben, > > What template are you trying to use? > > Regards, > Thomas > > On Tue, Aug 9, 2022 at 8:39 PM Addison, Reuben <[email protected]> > wrote: > > > > I want to use a different template apart from the MNI for my parcellation > (Yeo_JNeurophysiol11_FreeSurfer.zip). Below are the instructions given in > the readme. My question is – do I need to run this code before Recon-all or > after > > > > In terminal (ASSUMING shell is bash), > > a) "cd" to unzipped folder containing this README file, fsaverage, > fsaverage6, fsaverage5 > > b) export SUBJECTS_DIR=`pwd` > > c) tksurfer fsaverage5 lh inflated -annotation > fsaverage5/label/lh.Yeo2011_7Networks_N1000.annot > > > > > > > > Reuben A. > _______________________________________________ > Freesurfer mailing list > [email protected] > *MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1uJka6ZxGDk9uv1UdxIdtxFdOFoN25i0y-CBAB1SUkI7xUK3yNVaBRd1SvfUpmn-LOedbtsAvQ9PDtnb46N2PHHsZ8orpwYMX0ehnuE-6Df3qhS24K-2KLCX5WwRfyx40uXIccM3Q4hN3bkYJ028HEmQ3A6MRz4l7-ZhpC69cGtuhHjDdYy2RImCrGW6qF8pQiQGjRdlRjTOd5WlCFzsXUv3uNkYDHF7qOcTOWPp1H8wbOqlywyl9wyLRbJqJ_lV00A1zQs8HnxCXj9_NPbdoK5wAgGH2IUYeJXLg_7-hqndsl0fO8jU753AnE7IL2yLKprpl_9fum4onZBPFDF0AEw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > <https://secure-web.cisco.com/14BSO78GWppkTSRxKy0_i21J54-E8l5zZEm_fmrcGsTk5kdPqWEMlcdurhaFzwcXEUJxf_Ua-Mb4G-EjPqolSOyfPp3L-2iazGuf1ZiXH7PrunKUL-vDO0vylguwgxRcHhyn_LMatCC5B5i7b0BT99mTDw8bJLNpC4luB-CHTRDezMvrGno9aLbajAfIA7RpfOQEes3940XLdioVzOBgkcjXmsNaRPVzeY8vG0UQGOZ_wtDPnBYwtWhyXmKPu8vJWJYfrrdieXNDa6bjpaBQCtTuM94YwvtpQfzKJl7o4zr7N9qOgvS7OmGriFKlOEmmMYH7Xc-_QLkOWO8O0VwkL5g/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at *MailScanner has detected a possible fraud > attempt from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1hNznAV9hii2pdFzVk5GKoQ2jgbVqROxuu4CrgCUQmZYEk7vZ8y8LF1PRkgsZALOtYqa4pFp3lW_eT5V7aQC0KUoN1QsEAk_eEitsPC2yqmyqVnJxOvQfspGMecI1PbDy6eKxQC_hcy6qoSNiWePrlTPytA1cqcHYGoSsmOJl2Tq88qIPUCgdiuKvQISbh54fn_bQgsPyv47ioCUZHe9Zep20Ew7sj-WzDfG9F1nMPiuWvgi8Pc_Qb3j96mnepSsWsK-ChHseUuO805oohj6xQYNEAyNFg0f-y8pddMJmzBbHGMh-0JgPHO_BDAYMISMb8zknpIRVflR8dj9Nuf4F3g/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > <https://secure-web.cisco.com/1xSShaGz-dpcP-PLGR28kIpu-3fSoQL4tbE_iu8A44CCg4NaYMVbQs-xmQnbwekrjTSL_HCgfxKztCKV1NxXGvj7E6uxBq5U700tWPWjSkJbPYPaPxBkHGYem5RV500zrfrFO6TxoHXTz3F7jmcvIXjlrWqDbl29UDs8QrIEReEJ52Fo2K1JI7hlYPMywQsq-vg3-80k3H75KSFM-VxaYEeKCvGeElxlzzYXC2xEtuHhCS1TtpqrbKynoq1CAMEaOcpdzaZLZ4bpaIvMHofYJqY3c8m9px1mAnfzEg2hIRgYPIgPo0qmnv7kf88wWUyI3t1XqSAOMapEgW0hL4oim0A/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > <*MailScanner has detected a possible fraud attempt from > "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1hNznAV9hii2pdFzVk5GKoQ2jgbVqROxuu4CrgCUQmZYEk7vZ8y8LF1PRkgsZALOtYqa4pFp3lW_eT5V7aQC0KUoN1QsEAk_eEitsPC2yqmyqVnJxOvQfspGMecI1PbDy6eKxQC_hcy6qoSNiWePrlTPytA1cqcHYGoSsmOJl2Tq88qIPUCgdiuKvQISbh54fn_bQgsPyv47ioCUZHe9Zep20Ew7sj-WzDfG9F1nMPiuWvgi8Pc_Qb3j96mnepSsWsK-ChHseUuO805oohj6xQYNEAyNFg0f-y8pddMJmzBbHGMh-0JgPHO_BDAYMISMb8zknpIRVflR8dj9Nuf4F3g/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > <https://secure-web.cisco.com/1xSShaGz-dpcP-PLGR28kIpu-3fSoQL4tbE_iu8A44CCg4NaYMVbQs-xmQnbwekrjTSL_HCgfxKztCKV1NxXGvj7E6uxBq5U700tWPWjSkJbPYPaPxBkHGYem5RV500zrfrFO6TxoHXTz3F7jmcvIXjlrWqDbl29UDs8QrIEReEJ52Fo2K1JI7hlYPMywQsq-vg3-80k3H75KSFM-VxaYEeKCvGeElxlzzYXC2xEtuHhCS1TtpqrbKynoq1CAMEaOcpdzaZLZ4bpaIvMHofYJqY3c8m9px1mAnfzEg2hIRgYPIgPo0qmnv7kf88wWUyI3t1XqSAOMapEgW0hL4oim0A/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>> > . > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://secure-web.cisco.com/1uJka6ZxGDk9uv1UdxIdtxFdOFoN25i0y-CBAB1SUkI7xUK3yNVaBRd1SvfUpmn-LOedbtsAvQ9PDtnb46N2PHHsZ8orpwYMX0ehnuE-6Df3qhS24K-2KLCX5WwRfyx40uXIccM3Q4hN3bkYJ028HEmQ3A6MRz4l7-ZhpC69cGtuhHjDdYy2RImCrGW6qF8pQiQGjRdlRjTOd5WlCFzsXUv3uNkYDHF7qOcTOWPp1H8wbOqlywyl9wyLRbJqJ_lV00A1zQs8HnxCXj9_NPbdoK5wAgGH2IUYeJXLg_7-hqndsl0fO8jU753AnE7IL2yLKprpl_9fum4onZBPFDF0AEw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. 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_______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
