Marcus, 

 

Now here, I would argue that gravel is a very bad metaphor for base pairs.  The 
salient properties of the elements of gravel is that the particles are more or 
less uniform in shape free to move with respect to one another , and not easily 
compressed and broken.  Base pairs are of significantly different shapes, bind 
together importantly with each other and other substances, do not move freely 
with respect to one another,  and can readily be crushed and broken.  So, the 
argument would run, thinking of base pairs as gravel will lead to more errors 
than thinking of them as, say, dance partners in an elaborate contra-dance.  

 

Nick .  

 

Nicholas S. Thompson

Emeritus Professor of Psychology and Biology

Clark University

 <http://home.earthlink.net/~nickthompson/naturaldesigns/> 
http://home.earthlink.net/~nickthompson/naturaldesigns/

 

From: Friam [mailto:[email protected]] On Behalf Of Marcus Daniels
Sent: Sunday, September 11, 2016 10:33 AM
To: The Friday Morning Applied Complexity Coffee Group <[email protected]>
Subject: Re: [FRIAM] speaking of analytics - data mining

 

 

In anguish, the people invented an entire new profession - Data Mining -  that 
essentially 'crushed' the data stores creating gravel composed of individual 
datums and put the result in a different, more malleable matrix — live gravel 
in cement and sand and water (before the matrix dries). From this new medium 
the people would pluck bits of gravel and place them next to each other an 
proclaim, "Look! Information!"

 

That’s a funny story, but it overlooks the fact that sometimes all there is, is 
bits of gravel.  Like 3 billion base pairs of the human genome.   There’s no 
“teenage clerk” that has looked at most of it in detail or has much of any 
intuition about what it does.   Similarly, there’s no Rosetta stone for the 
nuances of why different whale species vocalize one way or another.  It’s just 
a process of throwing ideas against the wall and see if they stick.   Computers 
can do that more rapidly than humans can, at least.  Data mining isn’t just for 
developers in industry that can’t figure out how to decompose tables or make 
indices.

 

There are many approaches to modeling information, database normalization is 
one of many.   Information and category theory contribute other approaches. 

 

Marcus

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