It's exactly what I needed!!!
Thanks a lot!
L-A
Le 20/05/2011 12:29, Peter Cock a écrit :
2011/5/20 Louise-Amélie Schmitt<louise-amelie.schm...@embl.de>:
Hello
Is there a way to check the file type with a conditional tag set within a
tool?
For example, if the tool can accept several file types but I have to make
cheetah shut off some stuff for a couple of them?
You can do conditional code in the cheetah template using $input.ext
or $input.extension which both give you the Galaxy file type of an
input file parameter called $input.
For example, look at tools/fastx_toolkit/fastx_clipper.xml which does:
#if $input.ext == "fastqsanger":
-Q 33
#end if
Alternatively, if you want to do this in the script being called by Galaxy,
just pass $input.ext as part of the command line.
Peter
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