Shantanu Pavgi wrote:
>
> On May 24, 2011, at 4:49 AM, Nate Coraor wrote:
>
> > Shantanu Pavgi wrote:
> >>
> >> I am looking at options to configure settings such as wall-time, memory,
> >> and number of cores etc. for each tool and wondering if this can be done
> >> using multiple cluster job runner configurations. Is it possible to
> >> define multiple cluster job runner configurations for each tool? In the
> >> universe_wsgi.ini file it is mentioned that individual per-tool job
> >> runners can be specified, however I don't see any example other than
> >> 'default_cluster_job_runner'. So is there any key-value syntax for
> >> defining it in the ini file? I appreciate any comments or suggestions
> >> regarding this issue.
> >
> > Hi Shantanu,
> >
> > Please have a look at the examples in the [galaxy:tool_runners] section
> > at the bottom of universe_wsgi.ini and let us know if this suits your
> > needs.
> >
>
> Yes, that should work for me.
>
> I was wondering if I need to define job runners first and then specify it for
> each tool: e.g.
> {{{
> $job_runner_one = drmaa:// -V /
> $job_runner_two = drmaa:// -V -l h_rt=00:10:00 /
> ...
> ...
> $galaxy_tool_one = $job_runner_one
> ...
> }}}
The syntax is different, but this should be possible. See the
documentation on interpolation here:
http://docs.python.org/library/configparser.html
--nate
>
> But current configuration syntax should work. Thanks for the help.
>
> --
> Shantanu.
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