holidays.....so don't have my files here. It is applicable to a local galaxy instance as you probably figured out. You cannot do anything on the public galaxy instance. The documentation is here; option 21 sanitize. What you basically do is to exclude specific characters like the pipe from being sanitised. The grep option as mentioned at 21 is a good example that should explain it. http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax Good luck.
________________________________ Van: KOH Jia Yu Jayce [ko...@gis.a-star.edu.sg] Verzonden: maandag 15 augustus 2011 6:02 Aan: Bossers, Alex CC: 'firstname.lastname@example.org' Onderwerp: RE: filter Hi thanks, but what sanitizer option should I set it to? -----Original Message----- From: Bossers, Alex [mailto:alex.boss...@wur.nl] Sent: Thursday, August 04, 2011 3:11 PM To: KOH Jia Yu Jayce Cc: 'email@example.com' Subject: RE: filter If I understand it correctly; You have to check the sanitize option for your tool. The pipe (among others) is usually by default sanitised into X. Alex Van: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens KOH Jia Yu Jayce Verzonden: donderdag 4 augustus 2011 8:52 Aan: 'firstname.lastname@example.org' Onderwerp: [galaxy-dev] filter Filter and Sort -> Filter I filtered with the following criterion c16=='|' but in the final output it shows as Filtering with c16=='X' and obviously the output contains nothing. is this a bug or some feature? After I used <sanitizer sanitize="False"/> the problem was solved. Is the error intentional and has consequences that we might have missed? Or is it a bug? ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/