Is there a python script associated with the macs.xml file?

From: galaxy-dev-boun...@lists.bx.psu.edu 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Kanwei Li
Sent: Wednesday, August 24, 2011 5:41 PM
To: KOH Jia Yu Jayce
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] macs in galaxy

You can use the MACS wrappers here (for 1.4): 
https://bitbucket.org/cistrome/cistrome-harvard/src/779d208c2cbd/tools/peakcalling/

Until we officially add it to our distribution.

Thanks,

K
On Wed, Aug 24, 2011 at 8:32 PM, KOH Jia Yu Jayce 
<ko...@gis.a-star.edu.sg<mailto:ko...@gis.a-star.edu.sg>> wrote:
Yes. Thank you for your help ☺

-----Original Message-----
From: Kanwei Li [mailto:kan...@gmail.com<mailto:kan...@gmail.com>]
Sent: Wednesday, August 24, 2011 11:28 PM
To: KOH Jia Yu Jayce
Cc: galaxy-dev@lists.bx.psu.edu<mailto:galaxy-dev@lists.bx.psu.edu>
Subject: Re: [galaxy-dev] macs in galaxy

Hi Jayce,

Are you running this on your local instance? It seems you are running MACS 1.4, 
which our wrapper does not support yet, but we are planning to add a wrapper 
for 1.4 soon.

Thanks,

K
On Wed, Aug 24, 2011 at 4:20 AM, KOH Jia Yu Jayce 
<ko...@gis.a-star.edu.sg<mailto:ko...@gis.a-star.edu.sg>> wrote:
In running macs in galaxy, the following error was found

ERROR:root:mfold format error! Your input is '32'. It should be like '10,30'

A format for mfold like 10,30 is expected… but the default value configured in 
xml remains as 32. will there be an updated version of this xml in future?

Also after altering the default display mfold value to 10,30, type integer in 
the param tag for mfold become erroneous. May I ask what is the correct type 
for input format 10,30?

Thanks alot



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