>
> On Jan 4, 2012, at 6:44 PM, Ryan Golhar wrote:
>
> > On Wed, Jan 4, 2012 at 5:17 PM, Ryan Golhar <ngsbioinformat...@gmail.com>
> wrote:
> > I'm adding Data Libraries to my local galaxy instance.  I'm doing this
> by importing directories that contain bam and bai files.  I see the bam/bai
> files get added on the admin page and the Message is "This job is running".
>  qstat shows the job run and complete.  I checked my runner0.log and it
> registers the PBS job completed successfully.  But the web page never
> updates.  I tried to refresh the page by navigating away from it then back
> to it, but it still reads "This job is running".  How do I fix this?
> >
> > Some more information...I check my head node and I see samtools is
> running there.  Its running 'samtools index'.  So two problems:
> >
> > 1)  samtools is not using the cluster.  I assume this is a configuration
> setting somewhere.
>
> See set_metadata_externally in universe_wsgi.ini.  This should be set to
> True to run on the cluster.
>
> If you haven't seen the rest of the production server documentation, see
> http://usegalaxy.org/production
>
>
This is already set.  I set this in universe_wsgi.ini
(and universe_wsgi.webapp.ini and universe_wsgi.running.ini since I'm using
a proxy server and load balancer on Apache).  This was one of the first
things I set up.
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