Hello,

We want to move Galaxy's jobs from our small TORQUE local install to a big cluster running PBS Pro.


In the universe_wsgi.ini, I changed the cluster address as follows:
default_cluster_job_runner = pbs:///
to:
default_cluster_job_runner = pbs://sub-master/clng_new/
where sub-master is the name of the machine and clng_new is the queue.

However, I get an error when trying to run any job:

galaxy.jobs.runners.pbs ERROR 2012-01-16 11:10:00,894 Connection to PBS server for submit failed: 111: Could not find a text for this error, uhhh

This corresponds to the qsub error 111 (Cannot connect to specified server host) which is, for some reason, caught by pbs_python as an error of its own (111 not corresponding to any pbs_python error code, hence the face-plant-message).

Our guess is that we might need to re-scramble the pbs_python egg with PBS pro's libraries, is that correct?
If it's the case, what do we have to set as LIBTORQUE_DIR?

Thanks,
L-A
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

 http://lists.bx.psu.edu/

Reply via email to