On Jan 16, 2012, at 5:22 AM, Louise-Amélie Schmitt wrote:
> We want to move Galaxy's jobs from our small TORQUE local install to a big
> cluster running PBS Pro.
> In the universe_wsgi.ini, I changed the cluster address as follows:
> default_cluster_job_runner = pbs:///
> default_cluster_job_runner = pbs://sub-master/clng_new/
> where sub-master is the name of the machine and clng_new is the queue.
> However, I get an error when trying to run any job:
> galaxy.jobs.runners.pbs ERROR 2012-01-16 11:10:00,894 Connection to PBS
> server for submit failed: 111: Could not find a text for this error, uhhh
> This corresponds to the qsub error 111 (Cannot connect to specified server
> host) which is, for some reason, caught by pbs_python as an error of its own
> (111 not corresponding to any pbs_python error code, hence the
> Our guess is that we might need to re-scramble the pbs_python egg with PBS
> pro's libraries, is that correct?
> If it's the case, what do we have to set as LIBTORQUE_DIR?
pbs_python is only designed for TORQUE, I don't think it is compatible with the
PBS Pro API. For that, you need to use the drmaa runner, which uses the
FedStage libdrmaa for PBS Pro.
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