On Jan 16, 2012, at 5:22 AM, Louise-Amélie Schmitt wrote: > Hello, > > We want to move Galaxy's jobs from our small TORQUE local install to a big > cluster running PBS Pro. > > In the universe_wsgi.ini, I changed the cluster address as follows: > default_cluster_job_runner = pbs:/// > to: > default_cluster_job_runner = pbs://sub-master/clng_new/ > where sub-master is the name of the machine and clng_new is the queue. > > However, I get an error when trying to run any job: > > galaxy.jobs.runners.pbs ERROR 2012-01-16 11:10:00,894 Connection to PBS > server for submit failed: 111: Could not find a text for this error, uhhh > > This corresponds to the qsub error 111 (Cannot connect to specified server > host) which is, for some reason, caught by pbs_python as an error of its own > (111 not corresponding to any pbs_python error code, hence the > face-plant-message). > > Our guess is that we might need to re-scramble the pbs_python egg with PBS > pro's libraries, is that correct? > If it's the case, what do we have to set as LIBTORQUE_DIR?
Hi L-A, pbs_python is only designed for TORQUE, I don't think it is compatible with the PBS Pro API. For that, you need to use the drmaa runner, which uses the FedStage libdrmaa for PBS Pro. --nate > > Thanks, > L-A > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
