I am sorry, but I do not have a hgweb.config file in the install dir.
My organisation:
/home/galaxy/toolshed --> toolshed database for local repositories
/home/galaxy/galaxy-dist --> main installation directory
/home/galaxy/shed_tools --> dir for shed tools installed in galaxy
Note: the page to create a new repo loads well. When I fill in the
details and click 'save', the error described below appears.
If more info is needed, please do not hesitate to ask.
Joachim
PS: for completeness, all files in my installation directory top :-p
[galaxy@galaxy ~]$ ll -a galaxy-dist/
total 1716
drwxrwxr-x 19 galaxy galaxy 4096 Apr 2 15:57 .
drwx------ 21 galaxy galaxy 4096 Apr 2 13:33 ..
-rw-rw-r-- 1 galaxy galaxy 3994 Mar 27 17:04 buildbot_setup.sh
-rw-rw-r-- 1 galaxy galaxy 2244 Mar 29 11:48 community.log
-rw-rw-r-- 1 galaxy galaxy 116290 Apr 2 16:06 community_webapp.log
-rw-rw-r-- 1 galaxy galaxy 4 Apr 2 15:57 community_webapp.pid
-rw-rw-r-- 1 galaxy galaxy 2430 Apr 2 15:57 community_wsgi.ini
-rw-rw-r-- 1 galaxy galaxy 2331 Mar 27 17:04 community_wsgi.ini.sample
drwxrwxr-x 2 galaxy galaxy 4096 Mar 27 17:04 contrib
-rwxrwxr-x 1 galaxy galaxy 60 Mar 27 17:04 create_db.sh
drwxrwxr-x 2 galaxy galaxy 4096 Mar 27 17:04 cron
drwxrwxr-x 9 nobody nobody 4096 Mar 29 11:43 database
-rw-rw-r-- 1 galaxy galaxy 27442 Mar 27 17:04 datatypes_conf.xml
-rw-rw-r-- 1 galaxy galaxy 27442 Mar 27 17:04 datatypes_conf.xml.sample
-rw-rw-r-- 1 galaxy galaxy 1925 Mar 27 17:04
demo_sequencer_wsgi.ini.sample
drwxrwxr-x 7 galaxy galaxy 4096 Mar 27 17:04 display_applications
-rw-rw-r-- 1 galaxy galaxy 8965 Mar 27 17:04 dist-eggs.ini
-rw-rw-r-- 1 galaxy galaxy 521 Mar 27 17:04
distributed_object_store_conf.xml.sample
drwxrwxr-x 26 galaxy galaxy 4096 Mar 29 10:54 eggs
-rw-rw-r-- 1 galaxy galaxy 1687 Mar 27 17:04 eggs.ini
drwxrwxr-x 2 galaxy galaxy 4096 Mar 27 17:04 external_service_types
-rw-rw-r-- 1 galaxy galaxy 234 Mar 27 17:04
external_service_types_conf.xml
-rw-rw-r-- 1 galaxy galaxy 234 Mar 27 17:04
external_service_types_conf.xml.sample
-rwxrwxr-x 1 galaxy galaxy 146 Mar 27 17:04 extract_dataset_parts.sh
drwxrwxr-x 3 galaxy galaxy 4096 Mar 27 17:04 .hg
-rw-rw-r-- 1 galaxy galaxy 579 Mar 27 17:04 .hgignore
drwxrwxr-x 6 galaxy galaxy 4096 Apr 2 10:33 import
-rw-r--r-- 1 galaxy galaxy 17751 Apr 2 13:42 integrated_tool_panel.xml
drwxrwxr-x 4 galaxy galaxy 4096 Mar 27 17:04 lib
-rw-rw-r-- 1 galaxy galaxy 1254 Mar 27 17:04 LICENSE.txt
drwxrwxr-x 5 galaxy galaxy 4096 Mar 27 17:04 locale
-rwxrwxr-x 1 galaxy galaxy 238 Mar 27 17:04 manage_db.sh
-rw-rw-r-- 1 galaxy galaxy 63 Mar 27 17:04 manage_tools.sh
-rw-rw-r-- 1 galaxy galaxy 68 Mar 27 17:04 migrated_tools_conf.xml
-rw-rw-r-- 1 galaxy galaxy 68 Mar 27 17:04
migrated_tools_conf.xml.sample
-rw-rw-r-- 1 galaxy galaxy 1088563 Apr 2 15:47 paster.log
-rw-rw-r-- 1 galaxy galaxy 4 Apr 2 13:42 paster.pid
-rw-rw-r-- 1 galaxy galaxy 820 Mar 27 17:04 README.txt
-rw-rw-r-- 1 galaxy galaxy 2035 Mar 27 17:04 reports_wsgi.ini
-rw-rw-r-- 1 galaxy galaxy 2035 Mar 27 17:04 reports_wsgi.ini.sample
-rw-rw-r-- 1 galaxy galaxy 2244 Mar 28 09:41 run_community.log
-rwxrwxr-x 1 galaxy galaxy 146 Mar 27 17:04 run_community.sh
-rw-rw-r-- 1 galaxy galaxy 160 Mar 27 17:04 run_demo_sequencer.sh
-rwxrwxr-x 1 galaxy galaxy 1913 Mar 27 17:04 run_functional_tests.sh
-rw-rw-r-- 1 galaxy galaxy 153 Mar 27 17:04 run_galaxy_listener.sh
-rw-rw-r-- 1 galaxy galaxy 140 Mar 27 17:04 run_reports.sh
-rwxrwxr-x 1 galaxy galaxy 1437 Mar 27 17:04 run.sh
-rwxrwxr-x 1 galaxy galaxy 349 Mar 27 17:04 run_unit_tests.sh
drwxrwxr-x 15 galaxy galaxy 4096 Mar 27 17:05 scripts
-rwxrwxr-x 1 galaxy galaxy 63 Mar 27 17:04 set_metadata.sh
-rw-rw-r-- 1 galaxy galaxy 101 Mar 27 17:04 setup_rabbitmq.sh
-rw-rw-r-- 1 galaxy galaxy 79 Apr 2 12:56 shed_tool_conf.xml
-rw-rw-r-- 1 galaxy galaxy 69 Mar 27 17:04 shed_tool_conf.xml.sample
drwxrwxr-x 16 galaxy galaxy 4096 Mar 27 17:04 static
drwxrwxr-x 19 galaxy galaxy 4096 Mar 27 17:04 templates
drwxrwxr-x 5 galaxy galaxy 4096 Mar 27 17:04 test
drwxrwxr-x 18 galaxy galaxy 61440 Mar 27 17:04 test-data
-rw-rw-r-- 1 galaxy galaxy 27345 Mar 27 17:04 tool_conf.xml
-rw-rw-r-- 1 galaxy galaxy 21517 Mar 27 17:04 tool_conf.xml.main
-rw-rw-r-- 1 galaxy galaxy 27345 Mar 27 17:04 tool_conf.xml.sample
drwxrwxr-x 3 galaxy galaxy 4096 Mar 27 17:04 tool-data
-rw-rw-r-- 1 galaxy galaxy 5226 Mar 27 17:04 tool_data_table_conf.xml
-rw-rw-r-- 1 galaxy galaxy 3185 Mar 27 17:04
tool_data_table_conf.xml.oldlocstyle
-rw-rw-r-- 1 galaxy galaxy 5226 Mar 27 17:04
tool_data_table_conf.xml.sample
-rw-rw-r-- 1 galaxy galaxy 2618 Mar 27 17:04 tool_list.py
drwxrwxr-x 45 galaxy galaxy 4096 Mar 27 17:04 tools
-rw-rw-r-- 1 galaxy galaxy 291 Apr 2 12:57 tool_sheds_conf.xml
-rw-rw-r-- 1 galaxy galaxy 219 Mar 27 17:04 tool_sheds_conf.xml.sample
-rw-rw-r-- 1 galaxy galaxy 27983 Apr 2 15:55 universe_wsgi.ini
-rw-rw-r-- 1 galaxy galaxy 27949 Mar 27 17:04 universe_wsgi.ini.sample
On 04/02/2012 04:23 PM, Greg Von Kuster wrote:
It should be in your Galaxy installation directory, and your on-disk
repositories will be in a directory under the setting you've defined
for the "file_path" configuration in your community_wsgi.ini file.
On Apr 2, 2012, at 10:17 AM, Joachim Jacob wrote:
Hi Greg,
If it is most likely a configuration error, I will check my settings,
and let you know my progress.
But one note: I do not have a hgweb.config file. Where is it supposed
to reside? I cannot find this info on the toolshed wiki.
Joachim
On 04/02/2012 03:30 PM, Greg Von Kuster wrote:
Hi Joachim,
I've not seen this in any of my tool shed development environments,
nor using the test or main Galaxy tool sheds, so it is unlikely that
this is a bug. It looks more likely to be a configuration problem
in your local tool shed environment. Do the repositories defined in
your hgweb.config match those you have on disk?
Greg Von Kuster
On Apr 2, 2012, at 8:38 AM, Joachim Jacob wrote:
Hi all,
On a local Toolshed freshly installed, I got these errors when
browsing my repository.
Perhaps a bug?
Cheers,
Joachim
Server Error
URL:
http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories>>
Module paste.exceptions.errormiddleware:*143* in |__call__|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>app_iter
*=* self*.*application*(*environ*,* start_response*)*|
Module paste.debug.prints:*98* in |__call__|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>environ*,*
self*.*app*)*|
Module paste.wsgilib:*539* in |intercept_output|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>app_iter
*=* application*(*environ*,* replacement_start_response*)*|
Module paste.recursive:*80* in |__call__|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return*
self*.*application*(*environ*,* start_response*)*|
Module paste.httpexceptions:*632* in |__call__|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return*
self*.*application*(*environ*,* start_response*)*|
Module galaxy.web.framework.base:*160* in |__call__|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>body
*=* method*(* trans*,* ****kwargs *)*|
Module galaxy.webapps.community.controllers.repository:*985* in
|browse_repositories|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return*
self*.*repository_list_grid*(* trans*,* ****kwd *)*|
Module galaxy.web.framework.helpers.grids:*277* in |__call__|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>kwargs*=*kwargs
*)*|
Module galaxy.web.framework:*722* in |fill_template|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return*
self*.*fill_template_mako*(* filename*,* ****kwargs *)*|
Module galaxy.web.framework:*733* in |fill_template_mako|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return*
template*.*render*(* ****data *)*|
Module mako.template:*296* in |render|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return*
runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)*|
Module mako.runtime:*660* in |_render|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>****_kwargs_for_callable*(*callable_*,*
data*)**)*|
Module mako.runtime:*692* in |_render_context|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>_exec_template*(*inherit*,*
lclcontext*,* args*=*args*,* kwargs*=*kwargs*)*|
Module mako.runtime:*718* in |_exec_template|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>callable_*(*context*,*
***args*,* ****kwargs*)*|
Module _base_mako:*42* in |render_body|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>__M_writer*(*unicode*(*next*.*body*(**)**)**)*|
Module _grid_base_mako:*119* in |render_body|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>__M_writer*(*unicode*(*self*.*grid_body*(*
grid *)**)**)*|
Module _grid_base_mako:*790* in |render_grid_body|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>__M_writer*(*unicode*(*self*.*make_grid*(*
grid *)**)**)*|
Module _grid_base_mako:*819* in |render_make_grid|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>__M_writer*(*unicode*(*self*.*render_grid_table*(*
grid*,* show_item_checkboxes *)**)**)*|
Module _grid_base_mako:*768* in |render_render_grid_table|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>__M_writer*(*unicode*(*render_grid_table_body_contents*(*
grid*,* show_item_checkboxes *)**)**)*|
Module _grid_base_mako:*664* in |render_grid_table_body_contents|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*return*
render_render_grid_table_body_contents*(*context*,*grid*,*show_item_checkboxes*)*|
Module _grid_base_mako:*322* in
|render_render_grid_table_body_contents|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>value
*=* column*.*get_value*(* trans*,* grid*,* item *)*|
Module galaxy.webapps.community.controllers.repository:*84* in
|get_value|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>select_field
*=* build_changeset_revision_select_field*(* trans*,* repository *)*|
Module galaxy.webapps.community.controllers.common:*992* in
|build_changeset_revision_select_field|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>repo
*=* hg*.*repository*(* get_configured_ui*(**)**,*
repository*.*repo_path *)*|
Module galaxy.webapps.community.controllers.common:*757* in
|get_configured_ui|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>_ui*.*setconfig*(*
'ui'*,* 'quiet'*,* True *)*|
Module mercurial.ui:*113* in |setconfig|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>self*.*fixconfig*(**)*|
Module mercurial.ui:*100* in |fixconfig|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>self*.*quiet
*=* *not* self*.*debugflag *and* self*.*configbool*(*'ui'*,*
'quiet'*)*|
Module mercurial.ui:*134* in |configbool|
|>>
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#
<http://192.168.10.26:9009/repository/browse_repositories?webapp=community&operation=my_repositories#>>*if*
v*.*lower*(**)* *not* *in* _booleans*:*|
*AttributeError: 'bool' object has no attribute 'lower'
*
--
Joachim Jacob, PhD
Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
http://www.bits.vib.be
@bitsatvib
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___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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