Hi Peter,
Here is the full log:
This is MIRA V3.4.0 (production version).
Please cite: Chevreux, B., Wetter, T. and Suhai, S. (1999), Genome Sequence
Assembly Using Trace Signals and Additional Sequence Information.
Computer Science and Biology: Proceedings of the German Conference on
Bioinformatics (GCB) 99, pp. 45-56.
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http://www.chevreux.org/mira_mailinglists.html
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This ensures that requests don't get lost.
Compiled by: bach
Sun Aug 21 17:50:30 CEST 2011
On: Linux arcadia 2.6.38-11-generic #48-Ubuntu SMP Fri Jul 29 19:02:55
UTC 2011 x86_64 x86_64 x86_64 GNU/Linux
Compiled in boundtracking mode.
Compiled in bugtracking mode.
Compiled with ENABLE64 activated.
Runtime settings (sorry, for debug):
Size of size_t : 8
Size of uint32 : 4
Size of uint32_t: 4
Size of uint64 : 8
Size of uint64_t: 8
Current system: Linux whsiao-ubuntu 2.6.32-40-generic #87-Ubuntu SMP
Tue Mar 6 00:56:56 UTC 2012 x86_64 GNU/Linux
Parsing parameters: --job=denovo,genome,accurate SANGER_SETTINGS
-LR:lsd=1:mxti=0:ft=fastq
-FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat
COMMON_SETTINGS -OUT:orf=1:orc=1:ora=1:orw=1:orm=0:org=0:ors=0
-OUT:rrot=1:rtd=1
Parameters parsed without error, perfect.
-CL:pec and -CO:emeas1clpec are set, setting -CO:emea values to 1.
------------------------------------------------------------------------------
Parameter settings seen for:
Sanger data (also common parameters)
Used parameter settings:
General (-GE):
Project name in (proin) : mira
Project name out (proout) : mira
Number of threads (not) : 2
Automatic memory management (amm) : yes
Keep percent memory free (kpmf) : 15
Max. process size (mps) : 0
EST SNP pipeline step (esps) : 0
Use template information (uti) : yes
Template insert size minimum (tismin) : -1
Template insert size maximum (tismax) : -1
Template partner build direction (tpbd) : -1
Colour reads by hash frequency (crhf) : yes
Load reads options (-LR):
Load sequence data (lsd) : yes
File type (ft) : fastq
External quality (eq) : from SCF (scf)
Ext. qual. override (eqo) : no
Discard reads on e.q. error (droeqe): no
Solexa scores in qual file (ssiqf) : no
FASTQ qual offset (fqqo) : 0
Wants quality file (wqf) : yes
Read naming scheme (rns) : [san] Sanger Institute
(sanger)
Merge with XML trace info (mxti) : no
Filecheck only (fo) : no
Assembly options (-AS):
Number of passes (nop) : 4
Skim each pass (sep) : yes
Maximum number of RMB break loops (rbl) : 2
Maximum contigs per pass (mcpp) : 0
Minimum read length (mrl) : 80
Minimum reads per contig (mrpc) : 2
Base default quality (bdq) : 10
Enforce presence of qualities (epoq) : yes
Automatic repeat detection (ard) : yes
Coverage threshold (ardct) : 2
Minimum length (ardml) : 400
Grace length (ardgl) : 40
Use uniform read distribution (urd) : no
Start in pass (urdsip) : 3
Cutoff multiplier (urdcm) : 1.5
Keep long repeats separated (klrs) : no
Spoiler detection (sd) : yes
Last pass only (sdlpo) : yes
Use genomic pathfinder (ugpf) : yes
Use emergency search stop (uess) : yes
ESS partner depth (esspd) : 500
Use emergency blacklist (uebl) : yes
Use max. contig build time (umcbt) : no
Build time in seconds (bts) : 10000
Strain and backbone options (-SB):
Load straindata (lsd) : no
Assign default strain (ads) : no
Default strain name (dsn) : StrainX
Load backbone (lb) : no
Start backbone usage in pass (sbuip) : 3
Backbone file type (bft) : fasta
Backbone base quality (bbq) : 30
Backbone strain name (bsn) : ReferenceStrain
Force for all (bsnffa) : no
Backbone rail from strain (brfs) :
Backbone rail length (brl) : 0
Backbone rail overlap (bro) : 0
Also build new contigs (abnc) : yes
Dataprocessing options (-DP):
Use read extensions (ure) : yes
Read extension window length (rewl) : 30
Read extension w. maxerrors (rewme) : 2
First extension in pass (feip) : 0
Last extension in pass (leip) : 0
Clipping options (-CL):
Merge with SSAHA2/SMALT vector screen (msvs): no
Gap size (msvsgs) : 10
Max front gap (msvsmfg) : 60
Max end gap (msvsmeg) : 120
Strict front clip (msvssfc) : 0
Strict end clip (msvssec) : 0
Possible vector leftover clip (pvlc) : yes
maximum len allowed (pvcmla) : 18
Min qual. threshold for entire read (mqtfer): 0
Number of bases (mqtfernob) : 0
Quality clip (qc) : no
Minimum quality (qcmq) : 20
Window length (qcwl) : 30
Bad stretch quality clip (bsqc) : yes
Minimum quality (bsqcmq) : 20
Window length (bsqcwl) : 30
Masked bases clip (mbc) : yes
Gap size (mbcgs) : 20
Max front gap (mbcmfg) : 40
Max end gap (mbcmeg) : 60
Lower case clip (lcc) : no
Clip poly A/T at ends (cpat) : no
Keep poly-a signal (cpkps) : no
Minimum signal length (cpmsl) : 12
Max errors allowed (cpmea) : 1
Max gap from ends (cpmgfe) : 9
Clip 3 prime polybase (c3pp) : no
Minimum signal length (c3ppmsl) : 12
Max errors allowed (c3ppmea) : 2
Max gap from ends (c3ppmgfe) : 9
Clip known adaptors right (ckar) : no
Ensure minimum left clip (emlc) : yes
Minimum left clip req. (mlcr) : 25
Set minimum left clip to (smlc) : 30
Ensure minimum right clip (emrc) : no
Minimum right clip req. (mrcr) : 10
Set minimum right clip to (smrc) : 20
Apply SKIM chimera detection clip (ascdc) : yes
Apply SKIM junk detection clip (asjdc) : no
Propose end clips (pec) : yes
Bases per hash (pecbph) : 17
Handle Solexa GGCxG problem (pechsgp) : yes
Clip bad solexa ends (cbse) : yes
Parameters for SKIM algorithm (-SK):
Number of threads (not) : 2
Also compute reverse complements (acrc) : yes
Bases per hash (bph) : 21
Hash save stepping (hss) : 1
Percent required (pr) : 65
Max hits per read (mhpr) : 2000
Max megahub ratio (mmhr) : 0
SW check on backbones (swcob) : no
Freq. est. min normal (fenn) : 0.4
Freq. est. max normal (fexn) : 1.6
Freq. est. repeat (fer) : 1.9
Freq. est. heavy repeat (fehr) : 8
Freq. est. crazy (fecr) : 20
Mask nasty repeats (mnr) : yes
Nasty repeat ratio (nrr) : 100
Repeat level in info file (rliif) : 6
Max hashes in memory (mhim) : 15000000
MemCap: hit reduction (mchr) : 2048
Pathfinder options (-PF):
Use quick rule (uqr) : yes
Quick rule min len 1 (qrml1) : 200
Quick rule min sim 1 (qrms1) : 90
Quick rule min len 2 (qrml2) : 100
Quick rule min sim 2 (qrms2) : 95
Backbone quick overlap min len (bqoml) : 150
Max. start cache fill time (mscft) : 5
Align parameters for Smith-Waterman align (-AL):
Bandwidth in percent (bip) : 20
Bandwidth max (bmax) : 130
Bandwidth min (bmin) : 25
Minimum score (ms) : 30
Minimum overlap (mo) : 17
Minimum relative score in % (mrs) : 65
Solexa_hack_max_errors (shme) : 0
Extra gap penalty (egp) : no
extra gap penalty level (egpl) : [san] low
Max. egp in percent (megpp) : 100
Contig parameters (-CO):
Name prefix (np) : mira
Reject on drop in relative alignment score in % (rodirs) : 25
Mark repeats (mr) : yes
Only in result (mroir) : no
Assume SNP instead of repeats (asir) : no
Minimum reads per group needed for tagging (mrpg) : 2
Minimum neighbour quality needed for tagging (mnq) : 20
Minimum Group Quality needed for RMB Tagging (mgqrt) : 30
End-read Marking Exclusion Area in bases (emea) : 1
Set to 1 on clipping PEC (emeas1clpec) : yes
Also mark gap bases (amgb) : yes
Also mark gap bases - even multicolumn (amgbemc) : yes
Also mark gap bases - need both strands (amgbnbs): yes
Force non-IUPAC consensus per sequencing type (fnicpst) : no
Merge short reads (msr) : no
Keep ends unmerged (msrkeu) : -1
Gap override ratio (gor) : 66
Edit options (-ED):
Automatic contig editing (ace) : no
Sanger only:
Strict editing mode (sem) : no
Confirmation threshold in percent (ct) : 50
Misc (-MI):
Stop on NFS (sonfs) : yes
Extended log (el) : no
Large contig size (lcs) : 500
Large contig size for stats(lcs4s) : 5000
Stop on max read name length (somrnl) : 40
Directories (-DI):
Working directory :
When loading EXP files :
When loading SCF files :
Top directory for writing files : mira_assembly
For writing result files : mira_assembly/mira_d_results
For writing result info files : mira_assembly/mira_d_info
For writing tmp files : mira_assembly/mira_d_tmp
Tmp redirected to (trt) :
For writing checkpoint files : mira_assembly/mira_d_chkpt
File names (-FN):
When loading sequences from FASTA : mira_in.sanger.fasta
When loading qualities from FASTA quality : mira_in.sanger.fasta.qual
When loading sequences from FASTQ :
/media/partition2_/galaxydb_data/000/dataset_290.dat
When loading project from CAF : mira_in.sanger.caf
When loading project from MAF (disabled) : mira_in.sanger.maf
When loading EXP fofn : mira_in.sanger.fofn
When loading project from PHD : mira_in.phd.1
When loading strain data : mira_straindata_in.txt
When loading XML trace info files :
mira_traceinfo_in.sanger.xml
When loading SSAHA2 vector screen results :
mira_ssaha2vectorscreen_in.txt
When loading SMALT vector screen results :
mira_smaltvectorscreen_in.txt
When loading backbone from MAF : mira_backbone_in.maf
When loading backbone from CAF : mira_backbone_in.caf
When loading backbone from GenBank : mira_backbone_in.gbf
When loading backbone from GFF3 : mira_backbone_in.gff3
When loading backbone from FASTA : mira_backbone_in.fasta
Output files (-OUTPUT/-OUT):
Save simple singlets in project (sssip) : no
Save tagged singlets in project (stsip) : yes
Remove rollover tmps (rrot) : yes
Remove tmp directory (rtd) : yes
Result files:
Saved as CAF (orc) : yes
Saved as MAF (orm) : no
Saved as FASTA (orf) : yes
Saved as GAP4 (directed assembly) (org) : no
Saved as phrap ACE (ora) : yes
Saved as GFF3 (org3) : no
Saved as HTML (orh) : no
Saved as Transposed Contig Summary (ors) : no
Saved as simple text format (ort) : no
Saved as wiggle (orw) : yes
Temporary result files:
Saved as CAF (otc) : yes
Saved as MAF (otm) : no
Saved as FASTA (otf) : no
Saved as GAP4 (directed assembly) (otg) : no
Saved as phrap ACE (ota) : no
Saved as HTML (oth) : no
Saved as Transposed Contig Summary (ots) : no
Saved as simple text format (ott) : no
Extended temporary result files:
Saved as CAF (oetc) : no
Saved as FASTA (oetf) : no
Saved as GAP4 (directed assembly) (oetg) : no
Saved as phrap ACE (oeta) : no
Saved as HTML (oeth) : no
Save also singlets (oetas) : no
Alignment output customisation:
TEXT characters per line (tcpl) : 60
HTML characters per line (hcpl) : 60
TEXT end gap fill character (tegfc) :
HTML end gap fill character (hegfc) :
File / directory output names:
CAF : mira_out.caf
MAF : mira_out.maf
FASTA : mira_out.unpadded.fasta
FASTA quality : mira_out.unpadded.fasta.qual
FASTA (padded) : mira_out.padded.fasta
FASTA qual.(pad): mira_out.padded.fasta.qual
GAP4 (directory): mira_out.gap4da
ACE : mira_out.ace
HTML : mira_out.html
Simple text : mira_out.txt
TCS overview : mira_out.tcs
Wiggle : mira_out.wig
------------------------------------------------------------------------------
Deleting old directory mira_assembly ... done.
Creating directory mira_assembly ... done.
Creating directory mira_assembly/mira_d_tmp ... done.
Creating directory mira_assembly/mira_d_results ... done.
Creating directory mira_assembly/mira_d_info ... done.
Creating directory mira_assembly/mira_d_chkpt ... done.
Tmp directory is not on a NFS mount, good.
Localtime: Thu Apr 19 10:53:58 2012
Loading data (Sanger) from FASTQ files,
Localtime: Thu Apr 19 10:53:58 2012
Counting sequences in FASTQ file: found 1 sequences.
Localtime: Thu Apr 19 10:53:58 2012
Localtime: Thu Apr 19 10:53:58 2012
Checking SCF files (loading qualities only if needed):
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%]
....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%]
....|.... [90%] ....|.... [100%]
Done.
0 SCF files loaded ok.
Sanger will load 1 reads.
Longest Sanger: 36
Longest 454: 0
Longest IonTor: 0
Longest PacBio: 0
Longest Solexa: 0
Longest Solid: 0
Longest overall: 36
Total reads to load: 1
Reserving space for reads
Reserved space for 11 reads.
Loading data (Sanger) from FASTQ files,
Localtime: Thu Apr 19 10:53:58 2012
Counting sequences in FASTQ file: found 1 sequences.
Localtime: Thu Apr 19 10:53:58 2012
Using calculated FASTQ quality offset: 104
Localtime: Thu Apr 19 10:53:58 2012
Loading data from FASTQ file:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%]
....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%]
....|.... [90%] ....|.... [100%]
Done.
Loaded 1 reads, Localtime: Thu Apr 19 10:53:58 2012
Localtime: Thu Apr 19 10:53:58 2012
Checking SCF files (loading qualities only if needed):
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%]
....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%]
....|.... [90%] ....|.... [100%]
Done.
0 SCF files loaded ok.
1 SCF files were not found (see
'mira_assembly/mira_d_tmp/mira_info_scfreadfail.0' for a list of
names).
Loaded 1 Sanger reads.
Total reads loaded: 1
Localtime: Thu Apr 19 10:53:58 2012
Checking SCF files (loading qualities only if needed):
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%]
....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%]
....|.... [90%] ....|.... [100%]
Done.
0 SCF files loaded ok.
1 SCF files were not found (see
'mira_assembly/mira_d_tmp/mira_info_scfreadfail.0' for a list of
names).
Checking reads for trace data:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%]
....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%]
....|.... [90%] ....|.... [100%]
No SCF data present in any read, automatic contig editing for Sanger
data is now switched off.
1 reads with valid data for assembly.
Localtime: Thu Apr 19 10:53:58 2012
Generated 1 unique template ids for 1 valid reads.
No useful template information found, template routines will not be used.
Localtime: Thu Apr 19 10:53:58 2012
Generated 0 unique strain ids for 1 reads.
Strain "default" has 1 reads.
Have read pool with 1 reads.
===========================================================================
Pool statistics:
Backbones: 0 Backbone rails: 0
Sanger 454 IonTor PacBio Solexa SOLiD
----------------------------------------
Total reads 1 0 0 0 0 0
Reads wo qual 0 0 0 0 0 0
Used reads 0 0 0 0 0 0
Avg tot rlen 36 0 0 0 0 0
Avg rlen used 0 0 0 0 0 0
With strain 0 0 0 0 0 0
W/o clips 0 0 0 0 0 0
Sanger total bases:36 used bases in used reads: 0
454 total bases:0 used bases in used reads: 0
IonTor total bases:0 used bases in used reads: 0
PacBio total bases:0 used bases in used reads: 0
Solexa total bases:0 used bases in used reads: 0
Solid total bases:0 used bases in used reads: 0
===========================================================================
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 16209628 kB
MemFree: 6527928 kB
Buffers: 324332 kB
Cached: 6344208 kB
SwapCached: 424 kB
Active: 5900208 kB
Inactive: 2224260 kB
Active(anon): 1308772 kB
Inactive(anon): 179636 kB
Active(file): 4591436 kB
Inactive(file): 2044624 kB
Unevictable: 56 kB
Mlocked: 56 kB
SwapTotal: 39535608 kB
SwapFree: 39531904 kB
Dirty: 4292 kB
Writeback: 0 kB
AnonPages: 1455560 kB
Mapped: 187664 kB
Shmem: 32480 kB
Slab: 326072 kB
SReclaimable: 296460 kB
SUnreclaim: 29612 kB
KernelStack: 4000 kB
PageTables: 31452 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 47640420 kB
Committed_AS: 3610840 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 354268 kB
VmallocChunk: 34359380860 kB
HardwareCorrupted: 0 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 2587200 kB
DirectMap2M: 13926400 kB
DirectMap1G: 0 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
Tgid: 20591
Pid: 20591
PPid: 20590
TracerPid: 0
Uid: 0 0 0 0
Gid: 0 0 0 0
FDSize: 64
Groups: 0
VmPeak: 11920 kB
VmSize: 11916 kB
VmLck: 0 kB
VmHWM: 7192 kB
VmRSS: 7192 kB
VmData: 6556 kB
VmStk: 88 kB
VmExe: 5236 kB
VmLib: 0 kB
VmPTE: 40 kB
Threads: 1
SigQ: 1/16382
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000001001000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: ffffffffffffffff
CapEff: ffffffffffffffff
CapBnd: ffffffffffffffff
Cpus_allowed: 3f
Cpus_allowed_list: 0-5
Mems_allowed: 00000000,00000001
Mems_allowed_list: 0
voluntary_ctxt_switches: 10
nonvoluntary_ctxt_switches: 4
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 1 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 3136 (3 KiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 0 24 B 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 1 24 B 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 0 24 B 0 B 0 B
AS_clipright: 0 24 B 0 B 0 B
AS_used_ids: 0 24 B 0 B 0 B
AS_multicopies: 0 24 B 0 B 0 B
AS_hasmcoverlaps: 0 24 B 0 B 0 B
AS_maxcoveragereached: 0 24 B 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 0 24 B 0 B 0 B
AS_isdebris: 0 24 B 0 B 0 B
AS_needalloverlaps: 0 40 B 0 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedtmpfiles: 3 112 B 0 B 0 B
Total: 4008 (4 KiB)
================================================================================
Dynamic allocs: 0
Align allocs: 0
Fatal error (may be due to problems of the input data or parameters):
"No read can be used for assembly."
->Thrown: void Assembly::dumpSomeStatistics()
->Caught: main
Aborting process, probably due to error in the input data or parametrisation.
Please check the output log for more information.
For help, please write a mail to the mira talk mailing list.
Subscribing / unsubscribing to mira talk, see:
http://www.freelists.org/list/mira_talk
CWD: /usr/local/projects/galaxy-dist/database/job_working_directory/000/253
Thank you for noticing that this is *NOT* a crash, but a
controlled program stop.
MIRA took 0.00 minutes
Return error code 1 from command:
mira --job=denovo,genome,accurate SANGER_SETTINGS
-LR:lsd=1:mxti=0:ft=fastq
-FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat
COMMON_SETTINGS -OUT:orf=1:orc=1:ora=1:orw=1:orm=0:org=0:ors=0
-OUT:rrot=1:rtd=1
Thanks,
Tyler
On Thu, Apr 19, 2012 at 10:48 AM, Peter Cock <p.j.a.c...@googlemail.com>wrote:
> On Thu, Apr 19, 2012 at 6:35 PM, JIE CHEN <jiechenable1...@gmail.com>
> wrote:
> > Hi Peter,
> >
> > Thank you for your patience. I checked the error message in the history.
> > They all give exactly the same error-- the one i gave in the first
> thread.
>
> Are you saying this is the entire contents of the MIRA log entry in the
> history?
>
> Return error code 1 from command:
> mira --job=denovo,genome,accurate SANGER_SETTINGS
> -LR:lsd=1:mxti=0:ft=fastq
> -FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat
> SOLEXA_SETTINGS -LR:lsd=1:ft=fastq
> -FN:fqi=/media/partition2_/galaxydb_data/000/dataset_290.dat
> COMMON_SETTINGS -OUT:orf=1:orc=1:ora=1:orw=1:orm=0:org=0:ors=0
> -OUT:rrot=1:rtd=1
>
> I'm pretty sure you are just telling me the error message. I would have
> expected
> more than that, e.g. a line "MIRA took XXX minutes" before that error
> message.
>
> To try to be even clearer:
>
> 1. Start your web browser and goto your Galaxy
> 2. Upload/import the files
> 3. Select the MIRA tool from left hand pane
> 4. Select input files and set parameters
> 5. Click "Execute"
> 6. Notice that six new history entries appear: MIRA contigs (FASTA),
> MIRA contigs (QUAL)",MIRA contigs (CAF), MIRA contigs (ACE)", MIRA
> coverage (Wiggle), MIRA log
> 7. Wait for MIRA to fail and the six new history entries to go red.
> 8. Click on the "eye" icon for the red history item "MIRA log"
> 9. Copy and paste the MIRA log contents to an email.
>
> Also, and perhaps equally useful, can you access this server at the
> command line and try the exact same failing command (from a temp
> directory - it may create lots of files and folders)?
>
> Peter
>
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