Hi all,
I get the following error when I try to export a specific history to file:
10.1.5.190 - - [07/May/2012:18:01:08 +0200] "GET /history/export_archive
HTTP/1.1" 500 - "http://galaxy.immunbio.mpg.de/"; "Mozilla/5.0 (X11; U;
Linux x86_64; en-US; rv:1.9.2.24) Gecko/20111108 Fedora/3.6.24-1.fc14
Firefox/3.6.24"
Error - <type 'exceptions.TypeError'>:
<galaxy.tools.parameters.basic.UnvalidatedValue object at 0x8ba67d0> is
not JSON serializable
URL: http://galaxy.immunbio.mpg.de/history/export_archive
File
'/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/exceptions/errormiddleware.py',
line 143 in __call__
app_iter = self.application(environ, start_response)
File
'/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/recursive.py',
line 80 in __call__
return self.application(environ, start_response)
File
'/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py', line
632 in __call__
return self.application(environ, start_response)
File '/galaxy/galaxy_server/lib/galaxy/web/framework/base.py', line 160
in __call__
body = method( trans, **kwargs )
File '/galaxy/galaxy_server/lib/galaxy/web/controllers/history.py', line
678 in export_archive
history_exp_tool.execute( trans, incoming = params, set_output_hid =
True )
File '/galaxy/galaxy_server/lib/galaxy/tools/__init__.py', line 1517 in
execute
return self.tool_action.execute( self, trans, incoming=incoming,
set_output_hid=set_output_hid, history=history, **kwargs )
File
'/galaxy/galaxy_server/lib/galaxy/tools/actions/history_imp_exp.py',
line 106 in execute
include_deleted=incoming[ 'include_deleted' ] )
File '/galaxy/galaxy_server/lib/galaxy/tools/imp_exp/__init__.py', line
428 in setup_job
jobs_attrs_out.write( to_json_string( jobs_attrs,
cls=HistoryDatasetAssociationEncoder ) )
File
'/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/__init__.py',
line 268 in dumps
File
'/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
line 214 in encode
File
'/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
line 282 in iterencode
File '/galaxy/galaxy_server/lib/galaxy/tools/imp_exp/__init__.py', line
327 in default
return simplejson.JSONEncoder.default( self, obj )
File
'/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
line 190 in default
TypeError: <galaxy.tools.parameters.basic.UnvalidatedValue object at
0x8ba67d0> is not JSON serializable
I tracked the problem down to a single bed file. I copied it into a new
empty history and I can still not export this history to a file. This
file doesn't have any special characters in either its name, info or
annotation. I can't find anything special about this file...
Any help is greatly appreciated!
Best regards,
Sarah
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