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On 05/07/2012 06:28 PM, Jeremy Goecks wrote:
Sarah,

What tool was used to create the problematic dataset?

Thanks,
J.

On May 7, 2012, at 12:17 PM, Sarah Diehl wrote:

Hi all,

I get the following error when I try to export a specific history to file:

10.1.5.190 - - [07/May/2012:18:01:08 +0200] "GET /history/export_archive HTTP/1.1" 500 - 
"http://galaxy.immunbio.mpg.de/"; "Mozilla/5.0 (X11; U; Linux x86_64; en-US; rv:1.9.2.24) 
Gecko/20111108 Fedora/3.6.24-1.fc14 Firefox/3.6.24"
Error -<type 
'exceptions.TypeError'>:<galaxy.tools.parameters.basic.UnvalidatedValue object at 
0x8ba67d0>  is not JSON serializable
URL: http://galaxy.immunbio.mpg.de/history/export_archive
File 
'/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/exceptions/errormiddleware.py',
 line 143 in __call__
  app_iter = self.application(environ, start_response)
File '/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/recursive.py', line 
80 in __call__
  return self.application(environ, start_response)
File '/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py', 
line 632 in __call__
  return self.application(environ, start_response)
File '/galaxy/galaxy_server/lib/galaxy/web/framework/base.py', line 160 in 
__call__
  body = method( trans, **kwargs )
File '/galaxy/galaxy_server/lib/galaxy/web/controllers/history.py', line 678 in 
export_archive
  history_exp_tool.execute( trans, incoming = params, set_output_hid = True )
File '/galaxy/galaxy_server/lib/galaxy/tools/__init__.py', line 1517 in execute
  return self.tool_action.execute( self, trans, incoming=incoming, 
set_output_hid=set_output_hid, history=history, **kwargs )
File '/galaxy/galaxy_server/lib/galaxy/tools/actions/history_imp_exp.py', line 
106 in execute
  include_deleted=incoming[ 'include_deleted' ] )
File '/galaxy/galaxy_server/lib/galaxy/tools/imp_exp/__init__.py', line 428 in 
setup_job
  jobs_attrs_out.write( to_json_string( jobs_attrs, 
cls=HistoryDatasetAssociationEncoder ) )
File 
'/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/__init__.py',
 line 268 in dumps
File 
'/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
 line 214 in encode
File 
'/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
 line 282 in iterencode
File '/galaxy/galaxy_server/lib/galaxy/tools/imp_exp/__init__.py', line 327 in 
default
  return simplejson.JSONEncoder.default( self, obj )
File 
'/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
 line 190 in default
TypeError:<galaxy.tools.parameters.basic.UnvalidatedValue object at 0x8ba67d0>  
is not JSON serializable


I tracked the problem down to a single bed file. I copied it into a new empty 
history and I can still not export this history to a file. This file doesn't 
have any special characters in either its name, info or annotation. I can't 
find anything special about this file...

Any help is greatly appreciated!

Best regards,
Sarah
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