Sarah,

I'm not able to reproduce your issue using galaxy-central. This could mean that 
this bug has been fixed in galaxy-central but hasn't made it to galaxy-dist 
yet—it appears you are using galaxy-dist—or there's other information needed to 
reproduce this issue. A couple more questions:

Are you using galaxy-dist?
Can you reproduce the issue on our public server using the problematic dataset 
and/or workflow?

Thanks,
J.


On May 7, 2012, at 12:33 PM, Sarah Diehl wrote:

> Sort (version 1.0.1)
> 
> on column: c5
> with flavor: Numerical sort
> everything in: Descending order
> 
> 
> On 05/07/2012 06:28 PM, Jeremy Goecks wrote:
>> Sarah,
>> 
>> What tool was used to create the problematic dataset?
>> 
>> Thanks,
>> J.
>> 
>> On May 7, 2012, at 12:17 PM, Sarah Diehl wrote:
>> 
>>> Hi all,
>>> 
>>> I get the following error when I try to export a specific history to file:
>>> 
>>> 10.1.5.190 - - [07/May/2012:18:01:08 +0200] "GET /history/export_archive 
>>> HTTP/1.1" 500 - "http://galaxy.immunbio.mpg.de/"; "Mozilla/5.0 (X11; U; 
>>> Linux x86_64; en-US; rv:1.9.2.24) Gecko/20111108 Fedora/3.6.24-1.fc14 
>>> Firefox/3.6.24"
>>> Error -<type 
>>> 'exceptions.TypeError'>:<galaxy.tools.parameters.basic.UnvalidatedValue 
>>> object at 0x8ba67d0>  is not JSON serializable
>>> URL: http://galaxy.immunbio.mpg.de/history/export_archive
>>> File 
>>> '/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/exceptions/errormiddleware.py',
>>>  line 143 in __call__
>>> app_iter = self.application(environ, start_response)
>>> File '/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/recursive.py', 
>>> line 80 in __call__
>>> return self.application(environ, start_response)
>>> File 
>>> '/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py', 
>>> line 632 in __call__
>>> return self.application(environ, start_response)
>>> File '/galaxy/galaxy_server/lib/galaxy/web/framework/base.py', line 160 in 
>>> __call__
>>> body = method( trans, **kwargs )
>>> File '/galaxy/galaxy_server/lib/galaxy/web/controllers/history.py', line 
>>> 678 in export_archive
>>> history_exp_tool.execute( trans, incoming = params, set_output_hid = True )
>>> File '/galaxy/galaxy_server/lib/galaxy/tools/__init__.py', line 1517 in 
>>> execute
>>> return self.tool_action.execute( self, trans, incoming=incoming, 
>>> set_output_hid=set_output_hid, history=history, **kwargs )
>>> File '/galaxy/galaxy_server/lib/galaxy/tools/actions/history_imp_exp.py', 
>>> line 106 in execute
>>> include_deleted=incoming[ 'include_deleted' ] )
>>> File '/galaxy/galaxy_server/lib/galaxy/tools/imp_exp/__init__.py', line 428 
>>> in setup_job
>>> jobs_attrs_out.write( to_json_string( jobs_attrs, 
>>> cls=HistoryDatasetAssociationEncoder ) )
>>> File 
>>> '/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/__init__.py',
>>>  line 268 in dumps
>>> File 
>>> '/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
>>>  line 214 in encode
>>> File 
>>> '/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
>>>  line 282 in iterencode
>>> File '/galaxy/galaxy_server/lib/galaxy/tools/imp_exp/__init__.py', line 327 
>>> in default
>>> return simplejson.JSONEncoder.default( self, obj )
>>> File 
>>> '/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
>>>  line 190 in default
>>> TypeError:<galaxy.tools.parameters.basic.UnvalidatedValue object at 
>>> 0x8ba67d0>  is not JSON serializable
>>> 
>>> 
>>> I tracked the problem down to a single bed file. I copied it into a new 
>>> empty history and I can still not export this history to a file. This file 
>>> doesn't have any special characters in either its name, info or annotation. 
>>> I can't find anything special about this file...
>>> 
>>> Any help is greatly appreciated!
>>> 
>>> Best regards,
>>> Sarah
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