I'm getting this error when I try to run the tool migration:
sh ./scripts/migrate_tools/0003_tools.sh install_dependencies
No handlers could be found for logger "docutils"
Repositories will be installed into configured tool_path location ../shed_tools
Adding new row (or updating an existing row) for repository 'freebayes' in the tool_shed_repository table.
Traceback (most recent call last):
File "./scripts/migrate_tools/migrate_tools.py", line 21, in <module>
app = MigrateToolsApplication( sys.argv[ 1 ] )
File "/home/tdeboer/code/galaxy-copy/lib/galaxy/tool_shed/migrate/common.py", line 150, in __init__
install_dependencies=install_dependencies )
File "/home/tdeboer/code/galaxy-copy/lib/galaxy/tool_shed/install_manager.py", line 37, in __init__
self.install_repository( repository_elem, install_dependencies )
File "/home/tdeboer/code/galaxy-copy/lib/galaxy/tool_shed/install_manager.py", line 258, in install_repository
install_dependencies=install_dependencies )
File "/home/tdeboer/code/galaxy-copy/lib/galaxy/tool_shed/install_manager.py", line 174, in handle_repository_contents
tool_dependencies=tool_dependencies )
File "/home/tdeboer/code/galaxy-copy/lib/galaxy/util/shed_util.py", line 1231, in handle_tool_dependencies
tool_dependency = install_package( app, elem, tool_shed_repository, tool_dependencies=tool_dependencies )
File "/home/tdeboer/code/galaxy-copy/lib/galaxy/tool_shed/tool_dependencies/install_util.py", line 52, in install_package
install_dir = get_tool_dependency_install_dir( app, tool_shed_repository, package_name, package_version )
File "/home/tdeboer/code/galaxy-copy/lib/galaxy/tool_shed/tool_dependencies/install_util.py", line 42, in get_tool_dependency_install_dir
repository.installed_changeset_revision ) )
File "/home/tdeboer/code/galaxy_env/lib/python2.6/posixpath.py", line 67, in join
elif path == '' or path.endswith('/'):
AttributeError: 'NoneType' object has no attribute 'endswith'
Any ideas?
Thanks
Thon
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