On Wed, Dec 5, 2012 at 2:37 PM, Shaun Webb <[email protected]> wrote: > > I have just installed the Blast+ tools from the Galaxy tool shed and tried > to make a Blast DB from a fasta file in history. The tool runs ok and > indicates that a blastdb has been created in: > > /storage/home/galaxy/production/galaxy-dist/database/files/085/dataset_85192_files/blastdb >
There should be a collection of files named blastdb.* in the folder /storage/home/galaxy/production/galaxy-dist/database/files/085/dataset_85192_files/ > However there is no directory dataset_85192_files. I have blast installed > and I'm able to run makeblastdb on the command line. > > Do I have to make any other modifications before I can use Blast tools? I'm unsure what could be wrong. Do the other BLAST+ tools seem to work (e.g. blastp)? Are all the BLAST tools configured the same way in terms of universe_wsgi.ini and their job runners - or do you have some running on the cluster and some on the head node? My guess is something about the mounted storage, but then I would have expected problems with other tools as well. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
