On Sun, Jan 27, 2013 at 10:04 AM, Jeremy Goecks <jeremy.goe...@emory.edu> wrote:
> Actually, there an easier way to fix this without patching your Galaxy
> installation. Builds will show up in the library dbkey box if there's a
> chromosome length file associated with the build. Chromosome length files are
> used in some format converters (e.g. wig/bedgraph-to-bigwig) and for
> You can download len files by doing the following:
> (1) Uncomment/add len_file_path to your universe.wsgi.ini file, e.g.:
> len_file_path = tool-data/shared/ucsc/chrom
> (2) Run these commands from your Galaxy install to download len files from
> mkdir ./tool-data/shared/ucsc/chrom/
> python ./cron/build_chrom_db.py ./tool-data/shared/ucsc/chrom/
> (3) Restart Galaxy.
Thanks Jeremy, I will try this and report back.
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