On Mon, Jan 28, 2013 at 10:40 AM, Carlos Borroto <[email protected]> wrote: > On Sun, Jan 27, 2013 at 10:04 AM, Jeremy Goecks <[email protected]> > wrote: >> >> Actually, there an easier way to fix this without patching your Galaxy >> installation. Builds will show up in the library dbkey box if there's a >> chromosome length file associated with the build. Chromosome length files >> are used in some format converters (e.g. wig/bedgraph-to-bigwig) and for >> visualization. >> >> You can download len files by doing the following: >> >> (1) Uncomment/add len_file_path to your universe.wsgi.ini file, e.g.: >> >> len_file_path = tool-data/shared/ucsc/chrom >> >> >> (2) Run these commands from your Galaxy install to download len files from >> UCSC: >> >> mkdir ./tool-data/shared/ucsc/chrom/ >> python ./cron/build_chrom_db.py ./tool-data/shared/ucsc/chrom/ >> >> (3) Restart Galaxy. >> > > Thanks Jeremy, I will try this and report back.
I can confirm following these steps fix this issue. Thanks a lot, Carlos ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
