On Monday, February 4, 2013, Luobin Yang wrote:

> Hi, Peter,
> Thanks for pointing them out!
> The phi-blast and psi-blast actually share the same binary, both use the
> psiblast program in the NCBI BLAST+ tools. When the option -phi_pattern is
> used, then it does phi-blast searching.
> Best,
> Luobin
Could you give a few command line examples of how you typically use
psiblast,  focussing in the main options only?

I would find that helpful when putting together a new wrapper - since
including all the options right away is overwhelming.


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