Thanks, Eric Since the HDA is None, the if statement should be sending you the trans.show_error_message.
Just to make sure we're on the same page, could you please attach or post the errors method from the dataset controller in your installation. It can be found at lib/galaxy/webapps/galaxy/controllers/dataset.py? Carl On Tue, Mar 12, 2013 at 10:59 AM, Eric Enns <eric.e...@phac-aspc.gc.ca>wrote: > The following is the stack trace I got when I applied the patch and > clicked the bug icon. > > "GET /dataset/errors?id=c39bc73d0eae67dd HTTP/1.0" 500 - " > http://galaxy/history"; > Error - <type 'exceptions.AttributeError'>: 'NoneType' object has no > attribute 'hid' > URL: http://galaxy/dataset/errors?id=c39bc73d0eae67dd > File > '/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', > line 143 in __call_ _ > app_iter = self.application(environ, start_response) > File '/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 > in __call__ > return self.application(environ, start_response) > File '/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line > 632 in __call__ > return self.application(environ, start_response) > File '/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__ > return self.handle_request( environ, start_response ) > File '/galaxy-dist/lib/galaxy/web/framework/base.py', line 185 in > handle_request > body = method( trans, **kwargs ) > File '/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/dataset.py', line > 175 in errors > return trans.fill_template( "dataset/errors.mako", hda=hda ) > File '/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 848 in > fill_template > return self.fill_template_mako( filename, **kwargs ) > File '/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 859 in > fill_template_mako > return template.render( **data ) > File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/template.py', line 296 > in render > return runtime._render(self, self.callable_, args, data) > File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 660 in > _render > **_kwargs_for_callable(callable_, data)) > File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 692 in > _render_context > _exec _template(inherit, lclcontext, args=args, kwargs=kwargs) > File '/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 718 in > _exec_template > callable_(context, *args, **kwargs) > File '/galaxy-dist/database/compiled_templates/dataset/errors.mako.py', > line 27 in render_body > __M_writer(unicode(hda.hid)) > AttributeError: 'NoneType' object has no attribute 'hid' > > > -----Carl Eberhard <carlfeberh...@gmail.com> wrote: ----- > To: Eric Enns <eric.e...@phac-aspc.gc.ca> > From: Carl Eberhard <carlfeberh...@gmail.com> > Date: 03/12/2013 09:47AM > Cc: "galaxy-...@bx.psu.edu" <galaxy-...@bx.psu.edu>, Jean-Francois > Payotte <jean-francois.payo...@dnalandmarks.ca> > > Subject: Re: [galaxy-dev] Error Report contains STDERR from different job > > Can you post the stack trace from the error, please? > > Thanks for the info, > Carl > > > On Tue, Mar 12, 2013 at 10:37 AM, Eric Enns <eric.e...@phac-aspc.gc.ca>wrote: > >> Hey, >> >> I applied the patch and it does not help, instead I received a server >> error since hda was none. If it helps at all I am using mysql as my backend. >> >> -Eric >> >> -----Carl Eberhard <carlfeberh...@gmail.com> wrote: ----- >> To: Jean-Francois Payotte <jean-francois.payo...@dnalandmarks.ca> >> From: Carl Eberhard <carlfeberh...@gmail.com> >> Date: 03/08/2013 05:10PM >> Cc: eric.e...@phac-aspc.gc.ca, "galaxy-...@bx.psu.edu" < >> galaxy-...@bx.psu.edu> >> Subject: Re: [galaxy-dev] Error Report contains STDERR from different job >> >> >> Hello, >> Does applying the patch from "[galaxy-dev] Strange issue where the >> dataset reported in the bug report doesn't correspond to the current >> dataset" help? >> >> If not, we can diagnose further. Thanks, >> Carl >> >> >> >> On Fri, Mar 8, 2013 at 3:35 PM, Jean-Francois Payotte < >> jean-francois.payo...@dnalandmarks.ca> wrote: >> >>> Dear Eric, >>> >>> I'm glad to know that I am not the only one having this bug. (Even >>> though I would prefer if neither of us would have it). ;) >>> >>> I've already written twice to the galaxy mailing-list, but I didn't >>> receive any answers so far. >>> Let's hope someone will be able to help us solve this issue. >>> >>> You can see my mail thread here: >>> http://dev.list.galaxyproject.org/Strange-issue-where-the-dataset-reported-in-the-bug-report-doesn-t-correspond-to-the-current-dataset-td4658707.html >>> >>> Best regards, >>> >>> *Jean-Francois* >>> >>> >>> >>> >>> From: Eric Enns <eric.e...@phac-aspc.gc.ca> >>> To: galaxy-...@bx.psu.edu >>> Date: 08/03/2013 03:14 PM >>> Subject: [galaxy-dev] Error Report contains STDERR from >>> different job >>> Sent by: galaxy-dev-boun...@lists.bx.psu.edu >>> ------------------------------ >>> >>> >>> >>> Hey, >>> >>> When clicking the "View or report this error button" the error message >>> shown occasionally is from a different job. If you go into the info for the >>> job you can select stderr and see the correct error. If the user submits >>> the error to admins they receive the wrong error message and a link to the >>> wrong history. >>> >>> -Eric___________________________ _________________ _______ ________ >>> Please keep all replies on the list by using "reply all" >>> in your mail client. To manage your subscriptions to this >>> and other Galaxy lists, please use the interface at: >>> >>> http://lists.bx.psu.edu/ >>> >>> ____ _________________________ ________ _________________ _____ >>> >>> Please keep all replies on the list by using "reply all" >>> in your mail client. To manage your subscriptions to this >>> and other Galaxy lists, please use the interface at: >>> >>> http://lists.bx.psu.edu/ >>> >> >> >
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