On Apr 11, 2013, at 12:39 PM, Peter Cock wrote:

> On Thu, Apr 11, 2013 at 5:02 PM, John Chilton <chil...@msi.umn.edu> wrote:
>> Hey Peter,
>> 
>>  Hopefully Nate will have some wisdom, all I have is a workaround (I
>> have fought with this on multiple forks and this is the best I have
>> come up with).
>> 
>> Check out a clean version of the tools branch somehow (it seems like
>> the working contents can get stuck in an invalid state that update and
>> checkout cannot recover from). Once you are back to a good state, it
>> works when you merge in two steps.
>> 
>> hg checkout tools
>> hg merge -r ee389d2
>> hg ci -m "Partial merge."  # Not sure if this step is needed.
>> hg merge default
>> 
>> -John
> 
> I don't understand quite what it is doing, but it seems to have worked
> on a quick test repository (I re-cloned Galaxy and my fork on bitbucket).
> I've not just push any of these changes to bitbucket - they're all still
> local to this experiment for now.
> 
> Unless I hit an issue or Nate has some alternative recommendations,
> I'll probably do this tomorrow (its home time here in the UK).
> 
> Thanks John,
> 
> Peter


Hi Peter,

I don't see any problems with this.  You are merging twice, but simply doing so 
from two different points in the timeline.  Thanks for the solution, John.

--nate
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