Neil, AFAIK, python will not load a module unless the relevant script file is marked as executable by the current user? Try something like: chmod ugo+x scripts/db_shell.py and see if that fixes your problem?
On Tue, Apr 30, 2013 at 11:50 AM, <neil.burd...@csiro.au> wrote: > Hi, > I'm trying to use the tool, however, when I run it I get: > > > python create_galaxy_users.py > > Traceback (most recent call last): > File "create_galaxy_users.py", line 2, in <module> > from scripts.db_shell import * > ImportError: No module named scripts.db_shell > > I've set my PYTHONPATH to be ~/galaxy-dist/lib. What else do I need to do? > I'm running the script from ~/galaxy-dist/ directory, but I get the same > error if I copy it into the scripts directory. I've checked and I can see > that the scripts.db_shell.py script exists > > If I comment out the line then the next error I get is: > > python create_galaxy_users.py > Traceback (most recent call last): > File "create_galaxy_users.py", line 7, in <module> > from galaxy.security import GalaxyRBACAgent > File "/home/galaxy/galaxy-dist/lib/galaxy/security/__init__.py", line 9, > in <module> > from galaxy.model.orm import * > File "/home/galaxy/galaxy-dist/lib/galaxy/model/__init__.py", line 15, > in <module> > from galaxy.security import RBACAgent, get_permitted_actions > ImportError: cannot import name RBACAgent > > Any help much appreciated > > Neil > ---------------------------------------------------------------------- > > Message: 1 > Date: Sat, 27 Apr 2013 14:07:49 -0500 > From: John Chilton <chil...@msi.umn.edu> > To: Adam Brenner <aebre...@uci.edu> > Cc: "galaxy-dev@lists.bx.psu.edu" <galaxy-dev@lists.bx.psu.edu> > Subject: Re: [galaxy-dev] Command Line Tool for Creating New Users > Message-ID: > < > canwbokctvxo-dfmamr77fu6bbdhgr1stg7mph_lp+fe2nmc...@mail.gmail.com> > Content-Type: text/plain; charset=ISO-8859-1 > > I put together a script to do this. It is described in the galaxy-dev > thread titled: "[galaxy-dev] user creation using API". It doesn't actually > use the API, it uses the db_shell.py script. > > Hope this helps. > > -John > > >
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