Funny, it works for me. One last thought: You do still have the distributed __init__.py readable by your userid in /scripts so the module loader knows it's a python package directory?
On Tue, Apr 30, 2013 at 12:05 PM, <neil.burd...@csiro.au> wrote: > Thanks for the info Ross**** > > ** ** > > But I still get the same error**** > > ** ** > > “ImportError: No module named scripts.db_shell”**** > > ** ** > > After chmod 777 scripts/db_shell.py**** > > ** ** > > When you get “ImportError: No module named galaxy” for example it’s > because the PYTHONPATH isn’t set so I guess there’s some variable I need to > set for the scripts directory???**** > > ** ** > > Thanks anyway**** > > ** ** > > Neil**** > > ** ** > > *From:* Ross [mailto:ross.laza...@gmail.com] > *Sent:* Tuesday, 30 April 2013 12:00 PM > *To:* Burdett, Neil (ICT Centre, Herston - RBWH) > *Cc:* galaxy-dev@lists.bx.psu.edu > > *Subject:* Re: [galaxy-dev] Command Line Tool for Creating New Users**** > > ** ** > > Neil, **** > > AFAIK, python will not load a module unless the relevant script file is > marked as executable by the current user?**** > > Try something like:**** > > chmod ugo+x scripts/db_shell.py**** > > and see if that fixes your problem?**** > > ** ** > > ** ** > > On Tue, Apr 30, 2013 at 11:50 AM, <neil.burd...@csiro.au> wrote:**** > > Hi, > I'm trying to use the tool, however, when I run it I get: > > > python create_galaxy_users.py > > Traceback (most recent call last): > File "create_galaxy_users.py", line 2, in <module> > from scripts.db_shell import * > ImportError: No module named scripts.db_shell > > I've set my PYTHONPATH to be ~/galaxy-dist/lib. What else do I need to do? > I'm running the script from ~/galaxy-dist/ directory, but I get the same > error if I copy it into the scripts directory. I've checked and I can see > that the scripts.db_shell.py script exists > > If I comment out the line then the next error I get is: > > python create_galaxy_users.py > Traceback (most recent call last): > File "create_galaxy_users.py", line 7, in <module> > from galaxy.security import GalaxyRBACAgent > File "/home/galaxy/galaxy-dist/lib/galaxy/security/__init__.py", line 9, > in <module> > from galaxy.model.orm import * > File "/home/galaxy/galaxy-dist/lib/galaxy/model/__init__.py", line 15, > in <module> > from galaxy.security import RBACAgent, get_permitted_actions > ImportError: cannot import name RBACAgent > > Any help much appreciated > > Neil > ---------------------------------------------------------------------- > > Message: 1 > Date: Sat, 27 Apr 2013 14:07:49 -0500 > From: John Chilton <chil...@msi.umn.edu> > To: Adam Brenner <aebre...@uci.edu> > Cc: "galaxy-dev@lists.bx.psu.edu" <galaxy-dev@lists.bx.psu.edu> > Subject: Re: [galaxy-dev] Command Line Tool for Creating New Users > Message-ID: > < > canwbokctvxo-dfmamr77fu6bbdhgr1stg7mph_lp+fe2nmc...@mail.gmail.com> > Content-Type: text/plain; charset=ISO-8859-1 > > I put together a script to do this. It is described in the galaxy-dev > thread titled: "[galaxy-dev] user creation using API". It doesn't actually > use the API, it uses the db_shell.py script. > > Hope this helps. > > -John > > **** > -- Ross Lazarus MBBS MPH; Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444 http://scholar.google.com/citations?hl=en&user=UCUuEM4AAAAJ
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