Hi Dannon,

I will try with my yahoo id (does not have the dash) and will write to you soon.
Thank you.

Best wishes,
Anto

Anto Rajkumar, MD, DNB, MRCPsych,
PhD fellow, Department of Biomedicine,
Aarhus university,
8000 C, Aarhus, Denmark.
Ph (office)  : 045- 87167292
E-mail: a...@hum-gen.au.dk
________________________________
From: Dannon Baker [dannon.ba...@gmail.com]
Sent: 16 August 2013 16:33
To: Anto Praveen Rajkumar Rajamani
Cc: galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Is there a way to install a tool from toolshed in 
cloudman without using commands?

You've found a bug!  I see what's going on -- it looks like the validation code 
doesn't understand email addresses with dashes ("hum-gen", your domain).

I'll fix this, but for now you can always just register another user to use as 
admin "ad...@cloudgalaxy.org<mailto:ad...@cloudgalaxy.org>" or whatever 
username you'd like.  Register this user in galaxy, add it in that box, and you 
should be good to go.

Thanks for noticing this!

Dannon




On Fri, Aug 16, 2013 at 10:29 AM, Anto Praveen Rajkumar Rajamani 
<a...@hum-gen.au.dk<mailto:a...@hum-gen.au.dk>> wrote:
Hi Dannon,

Thank you for the kind reply.
I see this error, while I have 
"registeredemailaddr...@ec2domain.com<mailto:registeredemailaddr...@ec2domain.com>"
 in the box.
My registered email address is a...@hum-gen.au.dk<mailto:a...@hum-gen.au.dk>.
I use the domain name from my aws ec2 instance.
Where do I go wrong?

Best wishes,
Anto

Anto Rajkumar, MD, DNB, MRCPsych,
PhD fellow, Department of Biomedicine,
Aarhus university,
8000 C, Aarhus, Denmark.
E-mail: a...@hum-gen.au.dk<mailto:a...@hum-gen.au.dk>
________________________________
From: Dannon Baker [dannon.ba...@gmail.com<mailto:dannon.ba...@gmail.com>]
Sent: 16 August 2013 15:53

To: Anto Praveen Rajkumar Rajamani
Cc: galaxy-...@bx.psu.edu<mailto:galaxy-...@bx.psu.edu>
Subject: Re: [galaxy-dev] Is there a way to install a tool from toolshed in 
cloudman without using commands?

The only way I'm able to reproduce this on my end is by clicking "Add admin 
users" with the box next to it completely empty:

[Inline image 1]

You're seeing this error, and you have 
'yourn...@domain.com<mailto:yourn...@domain.com>' in the box?




On Fri, Aug 16, 2013 at 9:14 AM, Anto Praveen Rajkumar Rajamani 
<a...@hum-gen.au.dk<mailto:a...@hum-gen.au.dk>> wrote:
Hi Dannon,

I visited admin panel of  http://<my_ec2_instance>/cloud/admin
Under Add Galaxy admin users, I typed my email and pushed the "Add admin users" 
tab.
I get the following message,
Either no acceptable admin values provided ([]) or Galaxy service not found
Current Galaxy admin remains as 
cl...@galaxyproject.org<mailto:cl...@galaxyproject.org>.
Where do I go wrong?
How do I create the new admin user?

Best wishes,
Anto

________________________________
From: Dannon Baker [dannon.ba...@gmail.com<mailto:dannon.ba...@gmail.com>]
Sent: 16 August 2013 14:04
To: Anto Praveen Rajkumar Rajamani
Cc: galaxy-...@bx.psu.edu<mailto:galaxy-...@bx.psu.edu>
Subject: Re: [galaxy-dev] Is there a way to install a tool from toolshed in 
cloudman without using commands?

Hi Anto,

Yes, you should be able to create an admin user for your galaxy installation 
via the cloudman admin panel (http://<your_ec2_instance>/cloud/admin) in as an 
admin.  Once you're an admin user, you'll see the toolshed installation stuff 
in the galaxy admin panel.

-Dannon


On Fri, Aug 16, 2013 at 6:03 AM, Anto Praveen Rajkumar Rajamani 
<a...@hum-gen.au.dk<mailto:a...@hum-gen.au.dk>> wrote:
Hello,

I launched a new Cloudman instance last week to analyse my RNA-seq data.
I uploaded and cleaned my data, but could not run Tophat and Cufflinks due to 
the "Broken symbolic links" problem 
(https://bitbucket.org/galaxy/cloudman/issue/6/tool-default-symbolic-links-to-mnt).
I have completed running Tophat2 on the public server.
Now, I like to install edgeR 
(http://toolshed.g2.bx.psu.edu/repository?repository_id=0c447003da85ae19) from 
the toolshed for further analyses.
I cannot find a way to install that tool in my cloudman instance.
My background is in psychiatry and I do not have any knowledge of Linux 
commands.
Is there a way to install a tool (edgeR) from the toolshed without using 
command lines?
Any help is greatly appreciated.
Thank you.

Best wishes,
Anto


Anto Rajkumar, MD, DNB, MRCPsych,
PhD fellow, Department of Biomedicine,
Aarhus university,
8000 C, Aarhus, Denmark.
Ph (office)  : 045- 87167292
E-mail: a...@hum-gen.au.dk<mailto:a...@hum-gen.au.dk>

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<<inline: image.png>>

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