> We can hack the old wrapper back in, using a hard-coded path to the old
You could also use Managed Tool Dependencies for multiple versions of cuffdiff:
> Shantanu suggests it might be a better world if we create a tool-shed
> repository for the cuffdiff 1.3-2.1 (wrapper 0.0.5) version, then install
> Would that be a better path, or just add confusion?
This is on the right path. The right thing to do is migrate the Cuff* tool
wrappers out of the galaxy-central/dist repositories; this is a bit more effort
than simply creating the tool-shed repository for the wrappers.
There are two reasons I haven't done this:
(b) because the tools—and consequently the wrappers—are still in active
development, there needs to be a place for managing development of the
wrappers. Hence, the wrappers need a home on bitbucket or github, but we (the
Galaxy team) haven't determined where these wrappers should live.
(a) is a much more significant barrier than (b), so if a pull request migrating
Cuff* tools out of the distribution were made, I'm sure (b) could be worked out.
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: