> We can hack the old wrapper back in, using a hard-coded path to the old > cuffdiff.
You could also use Managed Tool Dependencies for multiple versions of cuffdiff: http://wiki.galaxyproject.org/Admin/Config/Tool%20Dependencies > Shantanu suggests it might be a better world if we create a tool-shed > repository for the cuffdiff 1.3-2.1 (wrapper 0.0.5) version, then install > that. > Would that be a better path, or just add confusion? This is on the right path. The right thing to do is migrate the Cuff* tool wrappers out of the galaxy-central/dist repositories; this is a bit more effort than simply creating the tool-shed repository for the wrappers. There are two reasons I haven't done this: (a) time; (b) because the tools—and consequently the wrappers—are still in active development, there needs to be a place for managing development of the wrappers. Hence, the wrappers need a home on bitbucket or github, but we (the Galaxy team) haven't determined where these wrappers should live. (a) is a much more significant barrier than (b), so if a pull request migrating Cuff* tools out of the distribution were made, I'm sure (b) could be worked out. Best, J.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
