Hi Ramon,

> Code:
> ________________________________________________________________
> <tool id="predictionModelTool" name="Modelo de Deteccao de Risco">
> ...
> <command interpreter="bash">r_wrapper.sh $script_file</command>
> <inputs>
> ...
> </inputs>
> <configfiles>
> <configfile name="script_file">
> 
> ...
> 
> file=file("output.txt","w")

Do not hardcode a filepath here, you need to reference the template
variable from your output section (name="output").

For example:
file=file("${output}","w")

> source("/home/ramao/Galaxy-ES/tools/my_tools/modeloCancroEuropeu.R")
> close(file)
> 
> 
> ...
> 
> </configfile>
> </configfiles>
> 
> <outputs><data format="txt" name="output.txt"/></outputs>

and here change that to:
<outputs><data format="txt" name="output"/></outputs>


Cheers,
Bjoern
> 
> ...
> </tool>
> ________________________________________________________________
> 
> 
> I'm having the output "empty" and I need that the result be generated
> in a text file. What can I do?
> 
> 
> Thank you
> ___________________________________________________________
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