Thank you, you solved my problem. Maybe you can help with one more thing, Can I
interact in the middle of an workflow execution ? For example: I have a
workflow with ten steps and after I started this, I want to select options
always before each step (like a software instalation). Is it possible? Thank
you one more time.
> Subject: Re: [galaxy-dev] How can I get a txt output file from R
> From: bjoern.gruen...@gmail.com
> To: ramao_tiago_tibur...@hotmail.com
> CC: galaxy-...@bx.psu.edu
> Date: Mon, 30 Sep 2013 19:18:55 +0200
>
> Hi Ramon,
>
>
> > Code:
> > ________________________________________________________________
> > <tool id="predictionModelTool" name="Modelo de Deteccao de Risco">
> > ...
> > <command interpreter="bash">r_wrapper.sh $script_file</command>
> > <inputs>
> > ...
> > </inputs>
> > <configfiles>
> > <configfile name="script_file">
> >
> > ...
> >
> > file=file("output.txt","w")
>
> Do not hardcode a filepath here, you need to reference the template
> variable from your output section (name="output").
>
> For example:
> file=file("${output}","w")
>
> > source("/home/ramao/Galaxy-ES/tools/my_tools/modeloCancroEuropeu.R")
> > close(file)
> >
> >
> > ...
> >
> > </configfile>
> > </configfiles>
> >
> > <outputs><data format="txt" name="output.txt"/></outputs>
>
> and here change that to:
> <outputs><data format="txt" name="output"/></outputs>
>
>
> Cheers,
> Bjoern
> >
> > ...
> > </tool>
> > ________________________________________________________________
> >
> >
> > I'm having the output "empty" and I need that the result be generated
> > in a text file. What can I do?
> >
> >
> > Thank you
> > ___________________________________________________________
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> >
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>
>
>
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