Am Montag, den 30.09.2013, 20:32 +0300 schrieb Ramon Tiburski:
> Thank you, you solved my problem. Maybe you can help with one more
> thing, Can I interact in the middle of an workflow execution ? For
> example: I have a workflow with ten steps and after I started this, I
> want to select options always before each step (like a software
> instalation). Is it possible? Thank you one more time.
I don't think that is possible. Is that still a workflow?
Ciao,
Bjoern
> > Subject: Re: [galaxy-dev] How can I get a txt output file from R
> > From: bjoern.gruen...@gmail.com
> > To: ramao_tiago_tibur...@hotmail.com
> > CC: galaxy-...@bx.psu.edu
> > Date: Mon, 30 Sep 2013 19:18:55 +0200
> >
> > Hi Ramon,
> >
> >
> > > Code:
> > > ________________________________________________________________
> > > <tool id="predictionModelTool" name="Modelo de Deteccao de Risco">
> > > ...
> > > <command interpreter="bash">r_wrapper.sh $script_file</command>
> > > <inputs>
> > > ...
> > > </inputs>
> > > <configfiles>
> > > <configfile name="script_file">
> > >
> > > ...
> > >
> > > file=file("output.txt","w")
> >
> > Do not hardcode a filepath here, you need to reference the template
> > variable from your output section (name="output").
> >
> > For example:
> > file=file("${output}","w")
> >
> > >
> source("/home/ramao/Galaxy-ES/tools/my_tools/modeloCancroEuropeu.R")
> > > close(file)
> > >
> > >
> > > ...
> > >
> > > </configfile>
> > > </configfiles>
> > >
> > > <outputs><data format="txt" name="output.txt"/></outputs>
> >
> > and here change that to:
> > <outputs><data format="txt" name="output"/></outputs>
> >
> >
> > Cheers,
> > Bjoern
> > >
> > > ...
> > > </tool>
> > > ________________________________________________________________
> > >
> > >
> > > I'm having the output "empty" and I need that the result be
> generated
> > > in a text file. What can I do?
> > >
> > >
> > > Thank you
> > > ___________________________________________________________
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> >
> >
>
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