I installed a local instance of galaxy approximately a month ago (build
2014.04.14).
I was having an issue with the Data Manager to fetch reference genomes and
after checking to see if there was a newer version of galaxy, I decided to
update and see if that fixed my problem.
I ran "hg pull" and then "hg update latest_2014.06.02". I tried to rerun galaxy
but was instructed to run manage_db.sh so I did (sh manage_db.sh upgrade).
When I ran galaxy after all this, it started but when opened in a web browser,
the navagation pane at the top is missing (i.e. Analyze Data, Workflows, User,
etc). There is a blue bar but nothing is on it.
How do I get the missing navigation pane back? I can't do a lot of things
without it (i.e. check help or change user settings). I can still get to the
administrator section but only by appending "/admin" to the url. I need to know
how to fix the new version or how to succesfully revert to a previous version
without anything else breaking.
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