Hey Stephen,

Not a true solution, but I solved a similar issue (missing history pane) by clearing out the browser cache.


Geert

On 06/10/2014 04:39 PM, Dannon Baker wrote:
Hey Stephen,

Can you look in the server logs to see if there are any errors being reported? Or if there are any javascript errors in the browser window?

You may also want to try clearing your browser cache.

-Dannon


On Tue, Jun 10, 2014 at 1:54 AM, Stephen E <sedwards...@hotmail.com <mailto:sedwards...@hotmail.com>> wrote:

    I installed a local instance of galaxy approximately a month ago
    (build 2014.04.14).

    I was having an issue with the Data Manager to fetch reference
    genomes and after checking to see if there was a newer version of
    galaxy, I decided to update and see if that fixed my problem.

    I ran "hg pull" and then "hg update latest_2014.06.02". I tried to
    rerun galaxy but was instructed to run manage_db.sh so I did (sh
    manage_db.sh upgrade).

    When I ran galaxy after all this, it started but when opened in a
    web browser, the navagation pane at the top is missing (i.e.
    Analyze Data, Workflows, User, etc). There is a blue bar but
    nothing is on it.

    How do I get the missing navigation pane back? I can't do a lot of
    things without it (i.e. check help or change user settings). I can
    still get to the administrator section but only by appending
    "/admin" to the url. I need to know how to fix the new version or
    how to succesfully revert to a previous version without anything
    else breaking.


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--

Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: geert.vandewe...@ua.ac.be
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/in/geertvandeweyer

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