After multiple restarts of my computer and the galaxy server program, it seems
to have come back so I guess that's solved.
Still can't successfully fetch reference genomes using the data manager but I
guess I should start a new question/thread for that. Gives some dependancy
error about samtools but I'm not sure if that is the real issue stopping it.
Anyway, thanks.
Stephen
Date: Tue, 10 Jun 2014 10:39:55 -0400
Subject: Re: [galaxy-dev] Missing navigation pane
From: dannon.ba...@gmail.com
To: sedwards...@hotmail.com
CC: galaxy-...@bx.psu.edu
Hey Stephen,
Can you look in the server logs to see if there are any errors being reported?
Or if there are any javascript errors in the browser window?
You may also want to try clearing your browser cache.
-Dannon
On Tue, Jun 10, 2014 at 1:54 AM, Stephen E <sedwards...@hotmail.com> wrote:
I installed a local instance of galaxy approximately a month ago (build
2014.04.14).
I was having an issue with the Data Manager to fetch reference genomes and
after checking to see if there was a newer version of galaxy, I decided to
update and see if that fixed my problem.
I ran "hg pull" and then "hg update latest_2014.06.02". I tried to rerun galaxy
but was instructed to run manage_db.sh so I did (sh manage_db.sh upgrade).
When I ran galaxy after all this, it started but when opened in a web browser,
the navagation pane at the top is missing (i.e. Analyze Data, Workflows, User,
etc). There is a blue bar but nothing is on it.
How do I get the missing navigation pane back? I can't do a lot of things
without it (i.e. check help or change user settings). I can still get to the
administrator section but only by appending "/admin" to the url. I need to know
how to fix the new version or how to succesfully revert to a previous version
without anything else breaking.
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