On Tue, Aug 12, 2014 at 3:03 AM, Juan Vladimir de la Rosa Medina < jvdelar...@hotmail.com> wrote:
> Hi everyone, > > I recently have installed a local instance of galaxy in my computer, > everything worked fine until I changed the path for *library_import_dir* in > the *universe_wsgi.ini* file, to upload files to data libraries. > I followed the Galaxy documentation to setup this feature: > > This is the path in the *universe_wsgi.ini* file > *library_import_dir = /media/New/Vladimir/My_RNA-seq/* > > The steps I followed are: > *Admin > Data Library > Create new data library > Add datasets > > Upload directory of files* > file format was set to *auto-detect* > server Directory was */media/New/Vladimir/My_RNA-seq/* > and we chose the option to *link to files* instead of copying them > > When I try to upload files, galaxy displays the following error: > > > *Error Traceback:* > > *⇝ AttributeError: 'NoneType' object has no attribute 'new_state'* > Juan, A bit of a guess here - have you removed the upload tool from your tool_conf.xml? --nate > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > *<?xml version="1.0" ?><traceback> <sysinfo> <language > version="2.7.3">Python</language> </sysinfo> <stack> <frame> > <module>weberror.evalexception.middleware</module> > > <filename>/home/labinmunologiaulpgc/galaxy-dist/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py</filename> > <line>364</line> <function>respond</function> > <operation>app_iter = self.application(environ, > detect_start_response)</operation> <operation_context> > try: __traceback_supplement__ = errormiddleware.Supplement, > self, environ app_iter = self.application(environ, > detect_start_response) try: return_iter = > list(app_iter) </operation_context> </frame> <frame> > <module>paste.recursive</module> > > <filename>/home/labinmunologiaulpgc/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py</filename> > <line>84</line> <function>__call__</function> > <operation>return self.application(environ, > start_response)</operation> <operation_context> > environ['paste.recursive.script_name'] = my_script_name > try: return self.application(environ, start_response) > except ForwardRequestException, e: middleware = > CheckForRecursionMiddleware(</operation_context> </frame> > <frame> <module>paste.httpexceptions</module> > > <filename>/home/labinmunologiaulpgc/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py > <http://httpexceptions.py/></filename> <line>633</line> > <function>__call__</function> <operation>return > self.application(environ, start_response)</operation> > <operation_context> []).append(HTTPException) > try: return self.application(environ, > start_response) except HTTPException, exc: return > exc(environ, start_response)</operation_context> </frame> > <frame> <module>galaxy.web.framework.base</module> > > <filename>/home/labinmunologiaulpgc/galaxy-dist/lib/galaxy/web/framework/base.py</filename> > <line>132</line> <function>__call__</function> > <operation>return self.handle_request( environ, start_response > )</operation> <operation_context> self.trace( > message="Starting request" ) try: return > self.handle_request( environ, start_response ) finally: > self.trace( message="Handle request finished" > )</operation_context> </frame> <frame> > <module>galaxy.web.framework.base</module> > > <filename>/home/labinmunologiaulpgc/galaxy-dist/lib/galaxy/web/framework/base.py</filename> > <line>190</line> <function>handle_request</function> > <operation>body = method( trans, **kwargs )</operation> > <operation_context> kwargs.pop( '_', None ) try: > body = method( trans, **kwargs ) except Exception, e: > body = self.handle_controller_exception( e, trans, **kwargs > )</operation_context> </frame> <frame> > <module>galaxy.webapps.galaxy.controllers.library_common</module> > > > <filename>/home/labinmunologiaulpgc/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/library_common.py</filename> > <line>927</line> > <function>upload_library_dataset</function> <operation>**kwd > )</operation> > <operation_context> > widgets=widgets, > > replace_dataset=replace_dataset, > **kwd ) if created_outputs_dict: if > cntrller == 'api':</operation_context> </frame> <frame> > <module>galaxy.webapps.galaxy.controllers.library_common</module> > > > <filename>/home/labinmunologiaulpgc/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/library_common.py</filename> > <line>1049</line> <function>upload_dataset</function> > <operation>state = tool.new_state( trans )</operation> > <operation_context> tool_id = 'upload1' tool = > trans.app.toolbox.get_tool( tool_id ) state = tool.new_state( trans > ) errors = tool.update_state( trans, tool.inputs_by_page[0], > state.inputs, kwd ) tool_params = state.inputs</operation_context> > </frame> </stack> <exception> > <type>AttributeError</type> <value>'NoneType' object has no > attribute 'new_state'</value> </exception></traceback>* > > > > I have been looking for a solution to fix this problem on the web without > success. > > > thank you very much > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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