Yes - I am with Iyad - having more context would probably help :). You
can inject job_wrapper related stuff into tool execution in a very
round about way perhaps by creating a dynamic job destination that
consumes the job_wrapper and then creates a job destination with
enviornment variables set to whatever it is you job needs. But that
solution is not very portable or simple - I can try to walk through
the steps in more detail though if it would be useful.
On Mon, Oct 6, 2014 at 9:28 PM, Kandalaft, Iyad
> Tell us what you are trying to do and maybe someone might know the way to
> solve it. It could be easier, the same, or more difficult than you imagined.
> Iyad Kandalaft
> Bioinformatics Programmer
> Microbial Biodiversity Bioinformatics
> Science & Technology Branch
> Agriculture & Agri-Food Canada
> iyad.kandal...@agr.gc.ca | (613) 759-1228
> From: galaxy-dev-boun...@lists.bx.psu.edu
> [galaxy-dev-boun...@lists.bx.psu.edu] on behalf of Alexandre Defelicibus
> Sent: October 6, 2014 4:50 PM
> To: <galaxy-...@bx.psu.edu>
> Subject: [galaxy-dev] Job wrapper object
> Hi all,
> I'm developing some tools on my Galaxy instance and I need to get some
> information about the job that a tool creates.
> The question is, how can I have a job_wrapper object in my tool wrapper? I
> tried to use the reserved variable $__app__, but I got errors.
> I couldn't import and use the galaxy lib in order to get the job information.
> Could someone show me the correct way to do that, with some examples?
> I appreciate all the help.
> Best regards,
> Alexandre Defelicibus
> Mestrando em Bioengenharia
> Programa de Pós-Graduação em Bioengenharia
> Universidade de São Paulo - USP
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